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Experiment Search Results


Poplar61k
1/48 Experiment PT49 Affymetrix data from Populus nectaries versus leaves
Submitter: PLEXdb Curator
Head of Lab: Peter Ache
Experiment Factors: organism part name
GeneChip Type: Poplar61k
Experiment design (6 hybridizations)
organism part name
•leaf •nectary

2/48 Experiment PT48 Transcript expression data from Populus euphratica leaves subjected to drought
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: water stress
GeneChip Type: Poplar61k
Experiment design (10 hybridizations)
water stress
•Watering 100% •Watering 70% •Watering 50% •Watering 20% •Watering 5%

3/48 Experiment PT47 Transcript expression data from Populus euphratica leaves subjected to infection by Marssonina pathogen
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: time
GeneChip Type: Poplar61k
Experiment design (6 hybridizations)
time
•0 dai •2 dai •7 dai

4/48 Experiment PT46 Transcriptome profiling data for secondary vascular tissue regeneration in Populus tomentosa
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name
GeneChip Type: Poplar61k
Experiment design (10 hybridizations)
developmental stage name
•diX •deX •rPh •diC •rC

5/48 Experiment PT45 Identification of Developing Xylem-Specific Promoters from Poplar by Using tissue type-Specific Whole Genome Transcriptome Analysis.
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: tissue type name
GeneChip Type: Poplar61k
Experiment design (16 hybridizations)
tissue type name
•Bark and Mature Phloem •Cambium •Developing Phloem •Developing Xylem •Mature Leaf •Mature Xylem •Shoot and Leaf Primordia •Whole Stem

6/48 Experiment PT44 affy_popsec_nancy_stomata_poplar -Molecular bases of acclimation and adaptation to water deficit in poplar
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genotype, water stress
GeneChip Type: Poplar61k
Experiment design (16 hybridizations)
genotype
•Carpaccio •Soligo
water stress
•control •early-drought stress •mild water deficit •moderate water deficit

7/48 Experiment PT43 Expression data from one-year-old leaves of Populus simonii treated with short-term water deficit
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: water stress
GeneChip Type: Poplar61k
Experiment design (4 hybridizations)
water stress
•water deficit •control

8/48 Experiment PT42 CO1 and CO2 network analysis in poplar
Submitter: PLEXdb Curator
Head of Lab: Cetin Yuceer
Experiment Factors: genetic line
GeneChip Type: Poplar61k
Experiment design (16 hybridizations)
genetic line
•overexpression CO1 •empty vec contol CO1 •overexpression CO2 •empty vec control CO2

9/48 Experiment PT41 CO2 network analysis in poplar
Submitter: PLEXdb Curator
Head of Lab: Cetin Yuceer
Experiment Factors: genetic line
GeneChip Type: Poplar61k
Experiment design (8 hybridizations)
genetic line
•overexpression CO2 •empty vec control CO2

10/48 Experiment PT40 CO1 network analysis in poplar
Submitter: PLEXdb Curator
Head of Lab: Cetin Yuceer
Experiment Factors: genetic line
GeneChip Type: Poplar61k
Experiment design (8 hybridizations)
genetic line
•overexpression CO1 •empty vec control C01

11/48 Experiment PT39 Comparison of male and female floral organs
Submitter: PLEXdb Curator
Head of Lab: Joshua Adams
Experiment Factors: organism part name
GeneChip Type: Poplar61k
Experiment design (10 hybridizations)
organism part name
•Male Bud •Female bud

12/48 Experiment PT38 Time-course bud expression data from Populus deltoides
Submitter: PLEXdb Curator
Head of Lab: Joshua Adams
Experiment Factors: time
GeneChip Type: Poplar61k
Experiment design (15 hybridizations)
time
•April •May •June •July •August

13/48 Experiment PT37 affy_rnai_cadpoplars: Transcriptome analysis of RNAi-CAD transgenic poplars
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genetic line
GeneChip Type: Poplar61k
Experiment design (4 hybridizations)
genetic line
•RNAi-CAD •control

14/48 Experiment PT36 Transcriptome response to embolism in stems of P. trichocarpa
Submitter: PLEXdb Curator
Head of Lab: Maciej Zwieniecki
Experiment Factors: treatment
GeneChip Type: Poplar61k
Experiment design (9 hybridizations)
treatment
•control •embolism •sucrose

15/48 Experiment PT35 Genome-wide transcript profiling associated with metabolic regulation of Poplar N storage and cycling
Submitter: PLEXdb Curator
Head of Lab: Gary Coleman
Experiment Factors: treatment
GeneChip Type: Poplar61k
Experiment design (30 hybridizations)
treatment
•water 48hrs •water 72hrs •glutamin 48hrs •glutamin 72hrs •glucose 48hrs •glucose 72hrs •glutamine+glucose 48hrs •glutamine+glucose 72hrs •control 1 •preincubated control 2

16/48 Experiment PT34 Expression data of male and female floral bud with Populus tomentosa during their development process.
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name
GeneChip Type: Poplar61k
Experiment design (2 hybridizations)
organism part name
•male bud •female bud

17/48 Experiment PT33 Clone History Shapes Populus Drought Responses
Submitter: PLEXdb Curator
Head of Lab: Malcolm M. Campbell
Experiment Factors: genetic line, growth condition, time
GeneChip Type: Poplar61k
Experiment design (72 hybridizations)
time
•A.M. •P.M.
genetic line
•DN(MB) •DN(SK) •WK(AB) •WK(SK) •WP(AB) •WP(SK)
growth condition
•well-watered •water-limited

18/48 Experiment PT32 FT1 and FT2 network analysis in poplar
Submitter: PLEXdb Curator
Head of Lab: Cetin Yuceer
Experiment Factors: treatment
GeneChip Type: Poplar61k
Experiment design (25 hybridizations)
treatment
•Heat Inducible FT1 •Heat Inducible FT2 •Heat Inducible WT Control •Overexpression FT1 •Overexpression FT2 •Overexpression Control FT1 •Overexpression Control FT2

19/48 Experiment PT31 Isolation of poplar genes involved in xylem vessel differentiation
Submitter: PLEXdb Curator
Head of Lab: Taku Demura
Experiment Factors: compound
GeneChip Type: Poplar61k
Experiment design (6 hybridizations)
compound
•mock •DEX

20/48 Experiment PT30 Novel aspects of transcriptional regulation in the winter survival and maintenance mechanism of perennial woody plants, poplar.
Submitter: PLEXdb Curator
Head of Lab: Kyung-Hwan Han
Experiment Factors: growth condition
GeneChip Type: Poplar61k
Experiment design (4 hybridizations)
growth condition
•summer •winter

21/48 Experiment PT29 Time-course leaf expression data from Populus deltoides
Submitter: PLEXdb Curator
Head of Lab: Cetin Yuceer
Experiment Factors: time
GeneChip Type: Poplar61k
Experiment design (24 hybridizations)
time
•Feb05(pre-formed) •Mar05(pre-formed) •Sep05(pre-formed) •Dec05(pre-formed) •Mar06(pre-formed) •Apr06(mature) •May06(mature) •Jun06(mature)

22/48 Experiment PT28 affy_popsec_nancy_leaves2007_poplar -Molecular bases of acclimatation and adaptation to water deficit in poplar
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genotype, stress condition
GeneChip Type: Poplar61k
Experiment design (16 hybridizations)
genotype
•Soligo •Carpacio
stress condition
•control •mild water deficit •moderate water deficit •early-drought stress

23/48 Experiment PT27 affy_popsec_nancy_leaves2008_poplar -Molecular bases of acclimatation and adaptation to water deficit in poplar
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genotype, stress condition
GeneChip Type: Poplar61k
Experiment design (8 hybridizations)
genotype
•Soligo •Carpacio
stress condition
•control •water deficit

24/48 Experiment PT26 affy_popsec_nancy_roots_poplar -Molecular bases of acclimation and adaptation to water deficit in poplar
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: cultivar, stress condition
GeneChip Type: Poplar61k
Experiment design (16 hybridizations)
cultivar
•Soligo •Carpacio
stress condition
•Control(CTL) •mild water deficit(AMI) •moderate water deficit(AMO) •early-drought stress(EAR)

25/48 Experiment PT25 affy_popsec_nancy_pophydro_roots_poplar -Molecular bases of acclimation and adaptation to water deficit in poplar
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: stress condition
GeneChip Type: Poplar61k
Experiment design (4 hybridizations)
stress condition
•control •water deficit(PEG)

26/48 Experiment PT24 Poplar cultivars Soligo and Carpacio
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genetic line
GeneChip Type: Poplar61k
Experiment design (4 hybridizations)
genetic line
•Soligo gDNA •Carpacio gDNA

27/48 Experiment PT23 Intraspecific variation in the Populus balsamifera drought transcriptome
Submitter: PLEXdb Curator
Head of Lab: Malcolm M. Campbell
Experiment Factors: genotype, stress condition, time
GeneChip Type: Poplar61k
Experiment design (72 hybridizations)
genotype
•AP-947 •AP-1005 •AP-1006 •AP-2278 •AP-2298 •AP-2300
stress condition
•well watered •water limited
time
•predawn •midday

28/48 Experiment PT22 Genotype and time of day shape the Populus drought response
Submitter: PLEXdb Curator
Head of Lab: Malcolm M. Campbell
Experiment Factors: genotype, stress condition, time
GeneChip Type: Poplar61k
Experiment design (48 hybridizations)
genotype
•DN34 •NM6
time
•midnight •predawn •midday •lateday
stress condition
•well watered •water limited

29/48 Experiment PT21 Endogenous overexpression of Poplar MYB186 increases trichome density, improves growth rate and insect pest resistance
Submitter: PLEXdb Curator
Head of Lab: Sharon Regan
Experiment Factors: genotype
GeneChip Type: Poplar61k
Experiment design (6 hybridizations)
genotype
•wildtype •fuzzy

30/48 Experiment PT20 rewatering-Global gene expression in young differentiating xylem of poplar in response to a drought –rewatering cycle
Submitter: PLEXdb Curator
Head of Lab: Martin-Magniette ML
Experiment Factors: stress condition
GeneChip Type: Poplar61k
Experiment design (6 hybridizations)
stress condition
•Irrigated Control •Water Deficit •Water Deficit Recovery

31/48 Experiment PT19 Characterization of Populus Class III HDZIPs
Submitter: PLEXdb Curator
Head of Lab: Andrew Groover
Experiment Factors: genotype
GeneChip Type: Poplar61k
Experiment design (12 hybridizations)
genotype
•HBMut2-4-1 •HBMut3-8-1 •wildtype

32/48 Experiment PT18 Transcriptomic response to aluminum stress in roots of aspen (Populus tremula L.)
Submitter: PLEXdb Curator
Head of Lab: Christoph Sperisen
Experiment Factors: compound, time
GeneChip Type: Poplar61k
Experiment design (18 hybridizations)
compound
•aluminum •control
time
•6 hrs •54 hrs •246 hrs

33/48 Experiment PT17 Gene expression response of Populus tremuloides cell suspension cultures to methyl jasmonate feeding
Submitter: PLEXdb Curator
Head of Lab: Scott A. Harding
Experiment Factors: compound
GeneChip Type: Poplar61k
Experiment design (4 hybridizations)
compound
•methyl jasmonate •control

34/48 Experiment PT16 Wound-induced gene expression changes in Populus: 90 hours; clone RM5
Submitter: PLEXdb Curator
Head of Lab: Scott A. Harding
Experiment Factors: stress condition, tissue type name
GeneChip Type: Poplar61k
Experiment design (8 hybridizations)
tissue type name
•leaf(LPI5) •root
stress condition
•control •wounded

35/48 Experiment PT15 Wound-induced gene expression changes in Populus: 1 week; clone RM5
Submitter: PLEXdb Curator
Head of Lab: Scott A. Harding
Experiment Factors: developmental stage name, stress condition
GeneChip Type: Poplar61k
Experiment design (8 hybridizations)
developmental stage name
•mature(LPI5) •young(LPI1)
stress condition
•control •wounded

36/48 Experiment PT14 Expression data from GA-modified polpar transgenic roots
Submitter: PLEXdb Curator
Head of Lab: Victor B. Busov
Experiment Factors: genotype
GeneChip Type: Poplar61k
Experiment design (12 hybridizations)
genotype
•wildtype •GA2ox1_dwarf •GA2ox1_semidwarf •GA2ox1_WTlike •rgl1_WTlike •rgl1_dwarf

37/48 Experiment PT13 Expression data from poplar apices
Submitter: PLEXdb Curator
Head of Lab: Victor Busov
Experiment Factors: genotype
GeneChip Type: Poplar61k
Experiment design (4 hybridizations)
genotype
•P35S::EBB1 •wildtype

38/48 Experiment PT11 Genome scale transcriptome analysis of shoot organogenesis in poplar
Submitter: PLEXdb Curator
Head of Lab: Steven H. Strauss
Experiment Factors: Organ Induction
GeneChip Type: Poplar61k
Experiment design (10 hybridizations)
Organ Induction
•before_cal_ind •3d_after_cal_ind •15d_after_cal_ind •3d_after_shoot_ind •8d_after_shoot_ind

39/48 Experiment PT10 Habituation to thaxtomin A provides enhanced and durable resistance to inhibitors of cellulose synthesis
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound
GeneChip Type: Poplar61k
Experiment design (6 hybridizations)
compound
•Non_Habituated •TA_Habituated

40/48 Experiment PT9 Expression profiling and functional analysis of poplar WRKY23 reveals a regulatory role in defense
Submitter: PLEXdb Curator
Head of Lab: Armand Séguin
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: Poplar61k
Experiment design (15 hybridizations)
pathogen inoculation
•Mock-inoculated •Mmt-inoculated
genotype
•Wild Type •WRKY23-overexpressor •WRKY23-RNAi

41/48 Experiment PT8 Expression profiling and functional analysis of poplar WRKY23 reveals a regulatory role in defense: WRKY23-RNAi
Submitter: PLEXdb Curator
Head of Lab: Armand Séguin
Experiment Factors: genotype
GeneChip Type: Poplar61k
Experiment design (6 hybridizations)
genotype
•Wild Type •WRKY23-RNAi

42/48 Experiment PT7 Expression profiling and functional analysis of poplar WRKY23 reveals a regulatory role in defense: WRKY23-overexpressor
Submitter: PLEXdb Curator
Head of Lab: Armand Séguin
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: Poplar61k
Experiment design (12 hybridizations)
genotype
•Wild Type •WRKY23-overexpressor
pathogen inoculation
•Mock •Mmt-inoculated

43/48 Experiment PT6 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name, line, stress condition, treatment
GeneChip Type: Poplar61k
Experiment design (24 hybridizations)
line
•clone1979 •clone3200
developmental stage name
•young(LPI2) •mature(LPI5)
stress condition
•5 mM (N+) •0.125 mM (N-)
treatment
•4weeks •8weeks

44/48 Experiment PT5 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name, stress condition, treatment
GeneChip Type: Poplar61k
Experiment design (12 hybridizations)
developmental stage name
•young(LPI2) •mature(LPI5)
stress condition
•5 mM (N+) •0.125 mM (N-)
treatment
•4weeks •8weeks

45/48 Experiment PT4 Effect of hypoxia on gene expression in Grey poplar
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name, time, treatment
GeneChip Type: Poplar61k
Experiment design (30 hybridizations)
time
•0 hrs •5 hrs •24 hrs •168 hrs
organism part name
•leaf •root
treatment
•control •flooded

46/48 Experiment PT3 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name, stress condition, treatment
GeneChip Type: Poplar61k
Experiment design (12 hybridizations)
developmental stage name
•young(LPI2) •mature(LPI5)
stress condition
•5 mM (N+) •0.125 mM (N-)
treatment
•4 weeks •8 weeks

47/48 Experiment PT2 Populus balsamifera developmental tissue series
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: tissue type name
GeneChip Type: Poplar61k
Experiment design (27 hybridizations)
tissue type name
•Seedling_continuous_light •Etiolated_seedling_6d_transfered_to_light •Etiolated_seedling •young_leaf_midday •root_midday •differentiating_xylem_midday •Female_Catkin_midday •Male_Catkin_midday •mature_leaf_midday

48/48 Experiment PT1 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: infection
GeneChip Type: Poplar61k
Experiment design (12 hybridizations)
infection
•Non_infected •Mlp_infected •Mmd_infected •Mixed_infected

 
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