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Experiment Search Results


tomato10k
1/21 Experiment LE22 Molecular analysis of a tomato OGDH antisense line
Submitter: PLEXdb Curator
Head of Lab: Mark Stitt
Experiment Factors: genotype
GeneChip Type: tomato10k
Experiment design (8 hybridizations)
genotype
•OGDH antisense •M82 wildtype

2/21 Experiment LE21 Microarray analysis of gene expression from different developmental stages of the tomato fruit
Submitter: PLEXdb Curator
Head of Lab: Tamas Dalmay
Experiment Factors: developmental stage name
GeneChip Type: tomato10k
Experiment design (10 hybridizations)
developmental stage name
•closed bud before flower blooming •open flower •fruit 1-3mm •fruit 5-7mm •fruit 11-14mm •mature green fruit •breaker stage fruit •3d post breaker •5d post breaker •7d post breaker

3/21 Experiment LE20 Microarray analysis of gene expression under different light conditions
Submitter: PLEXdb Curator
Head of Lab: Atsushi Fukushima
Experiment Factors: developmental stage name, light, time
GeneChip Type: tomato10k
Experiment design (20 hybridizations)
developmental stage name
•leaf •pericarp
light
•0 PPF •200 PPF •1000 PPF
time
•0 weeks •1 weeks •2 weeks

4/21 Experiment LE19 Understanding the complexity of fruit ripening by transcriptome analysis of rin mutant fruit
Submitter: PLEXdb Curator
Head of Lab: Arun K. Sharma
Experiment Factors: developmental stage name, genotype
GeneChip Type: tomato10k
Experiment design (18 hybridizations)
genotype
•wild type •rin mutant
developmental stage name
•immature green fruit •breaker fruit •red-ripe fruit

5/21 Experiment LE18 Microarray analysis of gene expression induced by Phytophthora infestans in tomato leaves
Submitter: PLEXdb Curator
Head of Lab: Muna Sultan
Experiment Factors: pathogen inoculation
GeneChip Type: tomato10k
Experiment design (7 hybridizations)
pathogen inoculation
•Healthy •Diseased

6/21 Experiment LE17 Genome wide expression analysis of psaA and psbA tobacco mutant plants.
Submitter: PLEXdb Curator
Head of Lab: V. Siva Reddy
Experiment Factors: genotype
GeneChip Type: tomato10k
Experiment design (6 hybridizations)
genotype
•psaA mutant •psbA mutant •normal

7/21 Experiment LE16 A tomato fruit RNA extraction method that isolates mRNAs encoding secreted and endomembrane associated proteins
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: protocol
GeneChip Type: tomato10k
Experiment design (3 hybridizations)
protocol
•RNA Extraction Ex1 •RNA Extraction Ex2 •RNA Extraction Ex2-pellet

8/21 Experiment LE15 Tomato fruit wound inoculation by C. coccodes and ammonium treated
Submitter: PLEXdb Curator
Head of Lab: Robert Fluhr
Experiment Factors: pathogen inoculation
GeneChip Type: tomato10k
Experiment design (8 hybridizations)
pathogen inoculation
•colletotrichum coccodes •control •ammonium •PBS control

9/21 Experiment LE14 Transcriptomic and metabolic responses of mycorrhizal roots to nitrogen patches under field conditions
Submitter: PLEXdb Curator
Head of Lab: Daniel P Schachtman
Experiment Factors: genotype, nutrient
GeneChip Type: tomato10k
Experiment design (30 hybridizations)
genotype
•wildtype •mutant(rmc)
nutrient
•control •low nitrogen •high nitrogen

10/21 Experiment LE13 Expression data in response to abiotic stresses in tomato at flowering stage (Heat Stress)
Submitter: PLEXdb Curator
Head of Lab: Narendra K. Singh
Experiment Factors: genotype, stress condition
GeneChip Type: tomato10k
Experiment design (12 hybridizations)
genotype
•heat suseptible •heat resistant
stress condition
•control •heat stressed

11/21 Experiment LE12 Expression data in response to abiotic stresses in tomato at flowering stage (Drought Stress)
Submitter: PLEXdb Curator
Head of Lab: Narendra K. Singh
Experiment Factors: genotype, stress condition
GeneChip Type: tomato10k
Experiment design (12 hybridizations)
genotype
•drought suseptible •drought resistant
stress condition
•control •water stressed

12/21 Experiment LE11 Expression data of fruits in the wildtype and ORR tomato plants
Submitter: PLEXdb Curator
Head of Lab: Asaph Aharoni
Experiment Factors: genotype
GeneChip Type: tomato10k
Experiment design (12 hybridizations)
genotype
•wildtype •homozygous Orr •heterozygous Orr •Orr excision line

13/21 Experiment LE10 Tomato root transcriptome response to a nitrogen-enriched soil patch
Submitter: PLEXdb Curator
Head of Lab: Daniel P Schachtman
Experiment Factors: nutrient
GeneChip Type: tomato10k
Experiment design (9 hybridizations)
nutrient
•water_control •low Nitrogen •high Nitrogen

14/21 Experiment LE9 Transcript profiling of tomato mutants producing anthocyanins in the fruit
Submitter: PLEXdb Curator
Head of Lab: Pierdomenico Perata
Experiment Factors: genotype
GeneChip Type: tomato10k
Experiment design (8 hybridizations)
genotype
•wild type •Aft mutant •atv mutant •Aft atv double mutant

15/21 Experiment LE8 Expression data from PSARK::IPT Nicotiana and wildtype plants
Submitter: PLEXdb Curator
Head of Lab: Eduardo Blumwald
Experiment Factors: genetic line, stress condition
GeneChip Type: tomato10k
Experiment design (12 hybridizations)
genetic line
•wildtype •transgenic PSARK::IPT
stress condition
•well-watered •water stressed

16/21 Experiment LE7 Expression data from various tomato plant tissues
Submitter: PLEXdb Curator
Head of Lab: Koh Aoki
Experiment Factors: tissue type name
GeneChip Type: tomato10k
Experiment design (67 hybridizations)
tissue type name
•Micro-Tom root •Micro-Tom hypocotyl •Micro-Tom cotyledon •Micro-Tom 3rd leaves 3wk •Micro-Tom all leaves 3wk •Micro-Tom all leaves 5wk •Micro-Tom flesh mature green fruit •Micro-Tom flesh yellow fruit •Micro-Tom flesh orange fruit •Micro-Tom flesh red fruit •Micro-Tom peel mature green fruit •Micro-Tom peel yellow fruit •Micro-Tom peel orange fruit •Micro-Tom peel red fruit •Aft flesh mature green fruit •Aft flesh red fruit •Aft peel of mature green fruit •Aft peel of red fruit •Line27859 flesh mature green fruit •Line27859 flesh red fruit •Line27859 peel mature green fruit •Line27859 peel red fruit •Momotaro8 flesh red fruit •Momotaro8 peel red fruit

17/21 Experiment LE6 tomato salt response
Submitter: PLEXdb Curator
Head of Lab: Xuejun Hua
Experiment Factors: strain, treatment
GeneChip Type: tomato10k
Experiment design (12 hybridizations)
treatment
•unstressed •salt stressed
strain
•tolerant P12365967 •moneymaker

18/21 Experiment LE5 Gene regulation in parthenocarpic tomato fruit
Submitter: PLEXdb Curator
Head of Lab: Abhaya M Dandekar
Experiment Factors: genetic line
GeneChip Type: tomato10k
Experiment design (17 hybridizations)
genetic line
•wildtype with seeds •wildtype seeds removed •INO-laaM •DefH9-laaM •INO-RolB •DefH9-RolB

19/21 Experiment LE3 Expression data of tomato fruit responses to Botrytis cinerea
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: fruit stage, pathogen infection
GeneChip Type: tomato10k
Experiment design (18 hybridizations)
fruit stage
•mature green •red ripe
pathogen infection
•healthy •mock inoculated •B. Cinerea inoculated

20/21 Experiment LE2 Tomato wild type, vector control and transgenic lines expressing InsP 5-ptase: mature fruits, root tips, and leaves
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name, transgenic
GeneChip Type: tomato10k
Experiment design (40 hybridizations)
organism part name
•fruits •leaves •root_tips
transgenic
•Wild type •Vector control •Transgen. Line N6 •Transgen. Line N7

21/21 Experiment LE1 Trafficking of mRNA from tomato to dodder
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: parasite
GeneChip Type: tomato10k
Experiment design (10 hybridizations)
parasite
•Tomato host tissue •Dodder_Tomato •Dodder_Arabidopsis(control) •Dodder_Tobacco(control) •Dodder_Pumpkin(control)

 
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