maize18k
nimbMaize
4/574
Experiment ZM54
Transcriptomic analysis of induced senescence in maize
Submitter:
Rajan Sekhon
Head of Lab:
Shawn Kaeppler
Experiment Factors:
developmental stage name, tissue type name, treatment
GeneChip Type:
nimbMaize
Experiment design (48 hybridizations)tissue type name •Leaf •Internode treatment •Pollinated •Non-Pollinated developmental stage name •0 DAA •6 DAA •12 DAA •18 DAA •24 DAA •30 DAA
maize18k
Maize100WT_maize
7/574
Experiment ZM50
Gene expression change caused by copy number variations
Submitter:
Thomas Peterson
Head of Lab:
Thomas Peterson
Experiment Factors:
genotype
GeneChip Type:
Maize100WT_maize
Experiment design (9 hybridizations)genotype •p1-ww714/p1-ww714 •p1-ww714/B73 •B73/B73
maize18k
nimbMaizeV2
18/574
Experiment ZM37
Genome-wide gene expression atlas of maize inbred line B73 (clone of ZM29 for nimbMaizeV2)
Submitter:
PLEXdb Curator
Head of Lab:
Shawn Kaeppler
Experiment Factors:
organism part name
GeneChip Type:
nimbMaizeV2
Experiment design (180 hybridizations)organism part name •24H_Germinating Seed •6DAS_GH_Coleoptile •6DAS_GH_Primary Root •V1_GH_Primary Root •VE_Whole Seedling •VE_Primary Root •V1_Pooled Leaves •V1_Stem and SAM •V4_Stem and SAM •V3_Stem and SAM •V3_First Leaf and Sheath •V3_Topmost Leaf •V5_Shoot Tip •V5_First Internode •V5_Tip of stage-2 Leaf •V5_Base of stage-2 Leaf •V7_First Internode •V7_Tip of stage-2 Leaf •V7_Base of stage-2 Leaf •V9_Fourth Internode •V9_Eighth Leaf •V9_Eleventh Leaf •V9_Thirteenth Leaf •V9_Immature Leaves •V13_Immature Tassel •V18_Meiotic Tassel •V18_Immature Cob •VT_Thirteenth Leaf •R1_Pre-pollination Cob •R1_Silks •R1_Anthers •R1_Innermost Husk •R2_Thirteenth Leaf •R2_Outer Husk •R2_Innermost Husk •2DAP_Whole Seed •4DAP_Whole Seed •6DAP_Whole Seed •8DAP_Whole Seed •10DAP_Whole Seed •12DAP_Whole Seed •12DAP_Endosperm •14DAP_Whole Seed •14DAP_Endosperm •16DAP_Whole Seed •16DAP_Endosperm •16DAP_Embryo •18DAP_Whole Seed •18DAP_Endosperm •18DAP_Embryo •18DAP_Pericarp •20DAP_Whole Seed •20DAP_Endosperm •20DAP_Embryo •22DAP_Whole Seed •22DAP_Endosperm •22DAP_Embryo •24DAP_Whole Seed •24DAP_Endosperm •24DAP_Embryo
maize18k
21/574
Experiment ZM34
Expression data from maize endosperm
Submitter:
PLEXdb Curator
Head of Lab:
Xiang Li
Experiment Factors:
genotype
GeneChip Type:
maize18k
Experiment design (9 hybridizations)genotype •wild type(B73) •ae wx •sh1
23/574
Experiment ZM32
Maize gene expression during infection with Fusarium moniliforme
Submitter:
PLEXdb Curator
Head of Lab:
Guangtang Pan
Experiment Factors:
genetic line, pathogen inoculation
GeneChip Type:
maize18k
Experiment design (8 hybridizations)genetic line •BT-1(Resistant) •Ye478(Suscpetible) pathogen inoculation •Control •Fusarium moniliform
nimbMaize
26/574
Experiment ZM29
Genome-wide gene expression atlas of maize inbred line B73
Submitter:
PLEXdb Curator
Head of Lab:
Shawn Kaeppler
Experiment Factors:
organism part name
GeneChip Type:
nimbMaize
Experiment design (180 hybridizations)organism part name •24H_Germinating Seed •6DAS_GH_Coleoptile •6DAS_GH_Primary Root •V1_GH_Primary Root •VE_Whole Seedling •VE_Primary Root •V1_Pooled Leaves •V1_Stem and SAM •V4_Stem and SAM •V3_Stem and SAM •V3_First Leaf and Sheath •V3_Topmost Leaf •V5_Shoot Tip •V5_First Internode •V5_Tip of stage-2 Leaf •V5_Base of stage-2 Leaf •V7_First Internode •V7_Tip of stage-2 Leaf •V7_Base of stage-2 Leaf •V9_Fourth Internode •V9_Eighth Leaf •V9_Eleventh Leaf •V9_Thirteenth Leaf •V9_Immature Leaves •V13_Immature Tassel •V18_Meiotic Tassel •V18_Immature Cob •VT_Thirteenth Leaf •R1_Pre-pollination Cob •R1_Silks •R1_Anthers •R1_Innermost Husk •R2_Thirteenth Leaf •R2_Outer Husk •R2_Innermost Husk •2DAP_Whole Seed •4DAP_Whole Seed •6DAP_Whole Seed •8DAP_Whole Seed •10DAP_Whole Seed •12DAP_Whole Seed •12DAP_Endosperm •14DAP_Whole Seed •14DAP_Endosperm •16DAP_Whole Seed •16DAP_Endosperm •16DAP_Embryo •18DAP_Whole Seed •18DAP_Endosperm •18DAP_Embryo •18DAP_Pericarp •20DAP_Whole Seed •20DAP_Endosperm •20DAP_Embryo •22DAP_Whole Seed •22DAP_Endosperm •22DAP_Embryo •24DAP_Whole Seed •24DAP_Endosperm •24DAP_Embryo
maize18k
27/574
Experiment ZM28
Circadian clock-mediated transcriptional regulation in maize
Submitter:
Frank G Harmon
Head of Lab:
Frank G. Harmon
Experiment Factors:
Continuous Light
GeneChip Type:
maize18k
Experiment design (12 hybridizations)Continuous Light •ZT0 •ZT4 •ZT8 •ZT12 •ZT16 •ZT20 •ZT24 •ZT28 •ZT32 •ZT36 •ZT40 •ZT44
32/574
Experiment ZM22
Gene expression variation among eight maize inbreds
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
genetic line
GeneChip Type:
maize18k
Experiment design (24 hybridizations)genetic line •B37 •B73 •B84 •Mo17 •Oh43 •B14a •W22 •Wf9
34/574
Experiment ZM20
Maize gene expression during infection with Ustilago maydis
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
pathogen infection, time
GeneChip Type:
maize18k
Experiment design (36 hybridizations)pathogen infection •mock •infected time •0.5 dpi •1 dpi •2 dpi •4 dpi •4.5 dpi •8 dpi
35/574
Experiment ZM19
Transcriptional and translational gene regulation in the maize pulvinus
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
gravity stimulation, pulvinus segment, RNA type
GeneChip Type:
maize18k
Experiment design (48 hybridizations)gravity stimulation •control •2 min •5 min •15 min •30 min •60 min pulvinus segment •upper •lower RNA type •total •polyribosme-associated
45/574
Experiment ZM4
B73-Mo17-F1 11 day seedling
Submitter:
Nathan M Springer
Experiment Factors:
genotype
GeneChip Type:
maize18k
Experiment design (12 hybridizations)genotype •B73 •Mo17 •B73 x Mo17 •Mo17 x B73
GrapeGen
Grape
51/574
Experiment VV41
Rootstock and soil effects on grape transcriptome
Submitter:
alessio aprile
Head of Lab:
Luigi Cattivelli
Experiment Factors:
treatment1, treatment2
GeneChip Type:
Grape
Experiment design (18 hybridizations)treatment1 •Turf •Sand •Asti soil treatment2 •101-14 rootstock •1103-P rootstock
GrapeGen
53/574
Experiment VV36
Time course of grapevine bud development
Submitter:
José Diaz-Riquelme
Head of Lab:
Jose.M. Martinez-Zapater
Experiment Factors:
time
GeneChip Type:
GrapeGen
Experiment design (24 hybridizations)time •MAY •JUNE •JULY •SEPTEMBER •NOVEMBER •JANUARY •MARCH •APRIL
54/574
Experiment VV33
Grape flesh and skin ripening transcriptomic profiling
Submitter:
Pablo Carbonell-Bejerano
Head of Lab:
José M. Martínez-Zapater
Experiment Factors:
developmental stage name, tissue type name
GeneChip Type:
GrapeGen
Experiment design (60 hybridizations)tissue type name •Flesh •Skin developmental stage name •P •V1 •V2 •R1 •R2
Grape
nimbGrape
56/574
Experiment VV30
The effects of ABA and ABF2 overexpression in cell culture
Submitter:
Grant R Cramer
Head of Lab:
Serge Delrot
Experiment Factors:
cell line, growth_regulator
GeneChip Type:
nimbGrape
Experiment design (12 hybridizations)cell line •pFB8 •35SABF2 growth_regulator •0 µM ABA •20 µM ABA
Grape
58/574
Experiment VV28
Gene expression associated with compatible viral diseases in berry
Submitter:
Andrea Vega
Head of Lab:
Patricio Arce-Johnson
Experiment Factors:
developmental stage name, pathogen infection
GeneChip Type:
Grape
Experiment design (14 hybridizations)pathogen infection •GLRaV-3 virus-infected •Virus-free developmental stage name •Veraison •Ripening
60/574
Experiment VV18
Grape_Bud_Dormancy
Submitter:
Anne Y Fennell
Head of Lab:
Anne Fennell
Experiment Factors:
genotype, photoperiod, time, year
GeneChip Type:
Grape
Experiment design (167 hybridizations)genotype •Seyval (SV, Seyve Villard 5-276) •V. riparia (VR, PI588259) year •1 •2 photoperiod •15 h •13 h time •1 days •3 days •7 days •14 days •21 days •28 days •42 days
63/574
Experiment VV15
Expression data in individual grape berries during ripening initation
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
berry position, developmental stage name, plant
GeneChip Type:
Grape
Experiment design (32 hybridizations)developmental stage name •green hard •green soft •pink soft •red soft berry position •distal •proximal plant •1 •2
64/574
Experiment VV14
Gene expression in grapevine in response to Bois noir infection
Submitter:
albertazzi giorgia
Head of Lab:
Nicola Pecchioni
Experiment Factors:
disease type, genotype
GeneChip Type:
Grape
Experiment design (10 hybridizations)genotype •Chardonnay •Incrocio Manzoni disease type •Bois Noir infected •Healthy
65/574
Experiment VV13
Powdery Mildew-Induced Transcriptome in a Resistant Grapevine ‘Norton’
Submitter:
Susanne Howard
Head of Lab:
Wenping Qiu, Laszlo Kovacs
Experiment Factors:
time, treated or untreated
GeneChip Type:
Grape
Experiment design (36 hybridizations)treated or untreated •PM-inoculated •mock-inoculated time •0 hai •4 hai •8 hai •12 hai •24 hai •48 hai
67/574
Experiment VV11
Pinot Noir berry transcriptome during ripening.
Submitter:
Stefania Pilati
Head of Lab:
Claudio Moser
Experiment Factors:
developmental stage, year
GeneChip Type:
Grape
Experiment design (27 hybridizations)year •2003 •2005 •2006 developmental stage •UD:0000034 33E-L, •UD:0000035 34E-L, •UD:0000037 36E-L,
68/574
Experiment VV10
Photoperiod regulation of grape bud dormancy
Submitter:
Anne Y Fennell
Head of Lab:
Fennell
Experiment Factors:
genotype, other, time
GeneChip Type:
Grape
Experiment design (84 hybridizations)genotype •Seyval (SV, Seyve Villard 5-276) •V. riparia (VR, PI588259) other •Long photoperiod (LD, 15h) •Short photoperiod (SD, 13h) time •1 days •3 days •7 days •14 days •21 days •28 days •42 days
69/574
Experiment VV9
High temperature effect on Cabernet Sauvignon berries
Submitter:
Kentaro Mori
Experiment Factors:
developmental stage, temperature
GeneChip Type:
Grape
Experiment design (12 hybridizations)developmental stage •2 weeks •4 weeks •6 weeks temperature •High temperature •Control
71/574
Experiment VV5
Chardonnay and Cabernet-Sauvignon's berry development
Submitter:
Laurent G Deluc
Experiment Factors:
cultivar, developmental stage, Treated or untreated
GeneChip Type:
Grape
Experiment design (84 hybridizations)developmental stage •31 •32 •33 •34 •35 •36 •38 Treated or untreated •WW •WD cultivar •Cab •Chard
72/574
Experiment VV3
Grape berry tissues differentiation
Submitter:
Jerome Grimplet
Experiment Factors:
tissue type, Treated or untreated
GeneChip Type:
Grape
Experiment design (18 hybridizations)tissue type •Pulp •Skin •Seed Treated or untreated •Well watered •Water deficit
73/574
Experiment VV2
Long-term Salt & Water Stress in Grapes
Submitter:
Grant R Cramer
Head of Lab:
Cramer
Experiment Factors:
stress, time
GeneChip Type:
Grape
Experiment design (39 hybridizations)time •Day 0 •Day 4 •Day 8 •Day 12 •Day 16 stress •Control •Water-Deficit •Salinity
74/574
Experiment VV1
short term abiotic stress Cabernet Sauvignon
Submitter:
Elizabeth A R Tattersall
Head of Lab:
Grant Cramer
Experiment Factors:
time, treatment
GeneChip Type:
Grape
Experiment design (48 hybridizations)time •0 h •1 h •4 h •8 h •24 h treatment •unstressed •salt •PEG •cold (5 C)
Wheat
77/574
Experiment TA47
Drought, heat and combined stress in durum wheat
Submitter:
alessio aprile
Head of Lab:
Luigi De Bellis
Experiment Factors:
genotype, treatment
GeneChip Type:
Wheat
Experiment design (24 hybridizations)treatment •CTRL •Drought •Heat •Mixed genotype •Ofanto •Cappelli
81/574
Experiment TA43
Expression data from Triticum aestivum L. roots
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
genotype, treatment
GeneChip Type:
Wheat
Experiment design (4 hybridizations)genotype •Luohan •Chinese Spring treatment •control •PEG
83/574
Experiment TA41
Response to Fusarium in near-isogenic lines harboring resistance QTLs Fhb1 and Qfhs.ifa-5A
Submitter:
Wolfgang Schweiger
Head of Lab:
Hermann Buerstmayr
Experiment Factors:
genotype, time, treatment
GeneChip Type:
Wheat
Experiment design (90 hybridizations)genotype •NIL1 (resistant, Fhb1, Qfhs.ifa-5A) •NIL2 (moderately resistant, Fhb1) •NIL3 (moderately resistant, Qfhs.ifa-5A) •NIL4 (susceptible) •CM82036 (resistant) treatment •Fusarium graminearum strain IFA-65 •water time •8 hai •24 hai •72 hai
86/574
Experiment TA38
affy_seed_kinetic_wheat-Transcriptomic wheat seed
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
time
GeneChip Type:
Wheat
Experiment design (10 hybridizations)time •B-100 degree days •C-200 degree days •D-250 degree days •E-300-degree days •G-500 degree days
95/574
Experiment TA29
Expression data from rust or mock inoculated, fully expanded flag leaf halves
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
genotype, organism part name, treatment
GeneChip Type:
Wheat
Experiment design (36 hybridizations)genotype •Jupateco_Lr34 (resistant) •Jupateco_Lr34(susceptible) •Thatcher_Lr34(resistant) •Thatcher_L34(susceptible) organism part name •basal leaf •distal leaf treatment •mock_inoculated •rust_inoculated
96/574
Experiment TA28
Wheat expression level polymorphism study parentals and progenies from SB location
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
genotype
GeneChip Type:
Wheat
Experiment design (76 hybridizations)genotype •AC Domain •RL4452 •G13 •F29 •H10 •G32 •H5 •DH91 •F36 •A91 •E5 •D15 •G30 •B68 •C31 •DH95 •A81 •A40 •A88 •A35 •A10 •C25 •F38b •F38a •D39 •B33 •J15 •F82 •C22 •F48 •F44 •H8 •B11 •H23 •B65 •C10 •A77 •H9
98/574
Experiment TA26
Transcriptome analysis of two Yr5 deletion mutants
Submitter:
Graham Robert David McGrann
Head of Lab:
Dr Lesley Boyd
Experiment Factors:
genotype
GeneChip Type:
Wheat
Experiment design (9 hybridizations)genotype •Yr5_WT •Yr5_del55 •Yr5_del67
101/574
Experiment TA23
Drought stress in Wheat at grain filling stage
Submitter:
alessio aprile
Head of Lab:
Luigi Cattivelli
Experiment Factors:
genotype, stress condition
GeneChip Type:
Wheat
Experiment design (27 hybridizations)genotype •Creso •CS •CS-5AL stress condition •Control •Mild stress •Severe stress
102/574
Experiment TA22
Freeze Resistance basis of winter wheat mutant lines
Submitter:
Fedora Sutton
Head of Lab:
Fedora Sutton
Experiment Factors:
genotype, temperature
GeneChip Type:
Wheat
Experiment design (8 hybridizations)genotype •SD16029 (FR) •SD16169 (FS) temperature •25 C •4 C
104/574
Experiment TA11
Wheat Yr39 and yr39 (Alpowa) genotypes treated with P.s. tritici PST-78
Submitter:
Tristan E Coram
Head of Lab:
Xianming Chen
Experiment Factors:
genotype, time, Treated or untreated
GeneChip Type:
Wheat
Experiment design (36 hybridizations)genotype •Yr39 •yr39 time •12 hpi •24 hpi •48 hpi Treated or untreated •P. s. tritici-inoculated •Mock-inoculated
106/574
Experiment TA9
Wheat Yr5 isolines treated with P.s. tritici PST-100 (06-194)
Submitter:
Tristan E Coram
Head of Lab:
Xianming Chen
Experiment Factors:
genotype, time, Treated or untreated
GeneChip Type:
Wheat
Experiment design (48 hybridizations)genotype •Yr5 isoline •yr5 isoline time •06h •12h •24h •48h Treated or untreated •P. s. tritici-inoculated •Mock-inoculated
107/574
Experiment TA8
Expression Profile Mapping - Location 2 - mapping population
Submitter:
Mark C Jordan
Experiment Factors:
genotype
GeneChip Type:
Wheat
Experiment design (72 hybridizations)genotype •G13 •F29 •H10 •G32 •H5 •DH91 •F36 •A91 •E5 •D15 •G30 •B68 •C31 •DH95 •A81 •A40 •A88 •A35 •A10 •C25 •F38b •F38a •D39 •B33 •J15 •F82 •C22 •F48 •F44 •H8 •B11 •H23 •B65 •C10 •A77 •H9
110/574
Experiment TA5
Expression Profile Mapping - 78 chip experiment final
Submitter:
Mark C Jordan
Experiment Factors:
genotype
GeneChip Type:
Wheat
Experiment design (78 hybridizations)genotype •A88 •F36 •B11 •DH91 •C58 •D15 •F29 •H23 •H5 •A81 •F48 •B65 •B33 •H8 •F44 •F38b •A91 •F82 •C10 •G13 •H10 •F87 •A35 •G30 •E5 •DH95 •C31 •A40 •C22 •B68 •H9 •G32 •F38a •C25 •J15 •A77 •D39 •A10 •B10
111/574
Experiment TA3
Transcription patterns during wheat development (Mirrors BB3)
Submitter:
Tim Sutton
Head of Lab:
Peter Langridge
Experiment Factors:
tissue type
GeneChip Type:
Wheat
Experiment design (39 hybridizations)tissue type •germinating seed, coleoptile •germinating seed, root •germinating seed, embryo •seedling, root •seedling, crown •seedling, leaf •immature inflorescence •floral bracts, before anthesis •pistil, before anthesis •anthers, before anthesis •3-5 DAP caryopsis •22 DAP embryo •22 DAP endosperm
112/574
Experiment TA2
Wheat GeneChip Test
Submitter:
Timothy J Close
Head of Lab:
Timothy J. Close
Experiment Factors:
dose
GeneChip Type:
Wheat
Experiment design (6 hybridizations)dose •LowSpike •HighSpike
sugarcane8k
Poplar61k
122/574
Experiment PT42
CO1 and CO2 network analysis in poplar
Submitter:
PLEXdb Curator
Head of Lab:
Cetin Yuceer
Experiment Factors:
genetic line
GeneChip Type:
Poplar61k
Experiment design (16 hybridizations)genetic line •overexpression CO1 •empty vec contol CO1 •overexpression CO2 •empty vec control CO2
123/574
Experiment PT41
CO2 network analysis in poplar
Submitter:
PLEXdb Curator
Head of Lab:
Cetin Yuceer
Experiment Factors:
genetic line
GeneChip Type:
Poplar61k
Experiment design (8 hybridizations)genetic line •overexpression CO2 •empty vec control CO2
124/574
Experiment PT40
CO1 network analysis in poplar
Submitter:
PLEXdb Curator
Head of Lab:
Cetin Yuceer
Experiment Factors:
genetic line
GeneChip Type:
Poplar61k
Experiment design (8 hybridizations)genetic line •overexpression CO1 •empty vec control C01
125/574
Experiment PT39
Comparison of male and female floral organs
Submitter:
PLEXdb Curator
Head of Lab:
Joshua Adams
Experiment Factors:
organism part name
GeneChip Type:
Poplar61k
Experiment design (10 hybridizations)organism part name •Male Bud •Female bud
131/574
Experiment PT33
Clone History Shapes Populus Drought Responses
Submitter:
PLEXdb Curator
Head of Lab:
Malcolm M. Campbell
Experiment Factors:
genetic line, growth condition, time
GeneChip Type:
Poplar61k
Experiment design (72 hybridizations)time •A.M. •P.M. genetic line •DN(MB) •DN(SK) •WK(AB) •WK(SK) •WP(AB) •WP(SK) growth condition •well-watered •water-limited
132/574
Experiment PT32
FT1 and FT2 network analysis in poplar
Submitter:
PLEXdb Curator
Head of Lab:
Cetin Yuceer
Experiment Factors:
treatment
GeneChip Type:
Poplar61k
Experiment design (25 hybridizations)treatment •Heat Inducible FT1 •Heat Inducible FT2 •Heat Inducible WT Control •Overexpression FT1 •Overexpression FT2 •Overexpression Control FT1 •Overexpression Control FT2
135/574
Experiment PT29
Time-course leaf expression data from Populus deltoides
Submitter:
PLEXdb Curator
Head of Lab:
Cetin Yuceer
Experiment Factors:
time
GeneChip Type:
Poplar61k
Experiment design (24 hybridizations)time •Feb05(pre-formed) •Mar05(pre-formed) •Sep05(pre-formed) •Dec05(pre-formed) •Mar06(pre-formed) •Apr06(mature) •May06(mature) •Jun06(mature)
140/574
Experiment PT24
Poplar cultivars Soligo and Carpacio
Submitter:
PLEXdb Curator
Head of Lab:
Claire Lurin
Experiment Factors:
genetic line
GeneChip Type:
Poplar61k
Experiment design (4 hybridizations)genetic line •Soligo gDNA •Carpacio gDNA
141/574
Experiment PT23
Intraspecific variation in the Populus balsamifera drought transcriptome
Submitter:
PLEXdb Curator
Head of Lab:
Malcolm M. Campbell
Experiment Factors:
genotype, stress condition, time
GeneChip Type:
Poplar61k
Experiment design (72 hybridizations)genotype •AP-947 •AP-1005 •AP-1006 •AP-2278 •AP-2298 •AP-2300 stress condition •well watered •water limited time •predawn •midday
142/574
Experiment PT22
Genotype and time of day shape the Populus drought response
Submitter:
PLEXdb Curator
Head of Lab:
Malcolm M. Campbell
Experiment Factors:
genotype, stress condition, time
GeneChip Type:
Poplar61k
Experiment design (48 hybridizations)genotype •DN34 •NM6 time •midnight •predawn •midday •lateday stress condition •well watered •water limited
145/574
Experiment PT19
Characterization of Populus Class III HDZIPs
Submitter:
PLEXdb Curator
Head of Lab:
Andrew Groover
Experiment Factors:
genotype
GeneChip Type:
Poplar61k
Experiment design (12 hybridizations)genotype •HBMut2-4-1 •HBMut3-8-1 •wildtype
149/574
Experiment PT15
Wound-induced gene expression changes in Populus: 1 week; clone RM5
Submitter:
PLEXdb Curator
Head of Lab:
Scott A. Harding
Experiment Factors:
developmental stage name, stress condition
GeneChip Type:
Poplar61k
Experiment design (8 hybridizations)developmental stage name •mature(LPI5) •young(LPI1) stress condition •control •wounded
150/574
Experiment PT14
Expression data from GA-modified polpar transgenic roots
Submitter:
PLEXdb Curator
Head of Lab:
Victor B. Busov
Experiment Factors:
genotype
GeneChip Type:
Poplar61k
Experiment design (12 hybridizations)genotype •wildtype •GA2ox1_dwarf •GA2ox1_semidwarf •GA2ox1_WTlike •rgl1_WTlike •rgl1_dwarf
151/574
Experiment PT13
Expression data from poplar apices
Submitter:
PLEXdb Curator
Head of Lab:
Victor Busov
Experiment Factors:
genotype
GeneChip Type:
Poplar61k
Experiment design (4 hybridizations)genotype •P35S::EBB1 •wildtype
152/574
Experiment PT11
Genome scale transcriptome analysis of shoot organogenesis in poplar
Submitter:
PLEXdb Curator
Head of Lab:
Steven H. Strauss
Experiment Factors:
Organ Induction
GeneChip Type:
Poplar61k
Experiment design (10 hybridizations)Organ Induction •before_cal_ind •3d_after_cal_ind •15d_after_cal_ind •3d_after_shoot_ind •8d_after_shoot_ind
157/574
Experiment PT6
Comparative transcriptomics analysis of Populus leaves under nitrogen limitation
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
developmental stage name, line, stress condition, treatment
GeneChip Type:
Poplar61k
Experiment design (24 hybridizations)line •clone1979 •clone3200 developmental stage name •young(LPI2) •mature(LPI5) stress condition •5 mM (N+) •0.125 mM (N-) treatment •4weeks •8weeks
159/574
Experiment PT4
Effect of hypoxia on gene expression in Grey poplar
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
organism part name, time, treatment
GeneChip Type:
Poplar61k
Experiment design (30 hybridizations)time •0 hrs •5 hrs •24 hrs •168 hrs organism part name •leaf •root treatment •control •flooded
161/574
Experiment PT2
Populus balsamifera developmental tissue series
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
tissue type name
GeneChip Type:
Poplar61k
Experiment design (27 hybridizations)tissue type name •Seedling_continuous_light •Etiolated_seedling_6d_transfered_to_light •Etiolated_seedling •young_leaf_midday •root_midday •differentiating_xylem_midday •Female_Catkin_midday •Male_Catkin_midday •mature_leaf_midday
Rice57k
167/574
Experiment OS98
Nitrogen-efficient rice over-expressing alanine aminotransferase
Submitter:
PLEXdb Curator
Head of Lab:
Perrin Hudson Beatty
Experiment Factors:
genetic line, organism part name
GeneChip Type:
Rice57k
Experiment design (32 hybridizations)organism part name •shoot •root genetic line •wildtype-NB •AlaAT-ox-1/7 •AlaAT-ox-1/8 •AlaAT-ox-3/8
175/574
Experiment OS90
Expression data from rice seeds during low temperature treatment
Submitter:
PLEXdb Curator
Head of Lab:
Hong-Wei Xue
Experiment Factors:
cultivar, treatment
GeneChip Type:
Rice57k
Experiment design (16 hybridizations)cultivar •Hanfeng •Zhonghua11 treatment •4DAF-2d cold •4DAF-2d normal •4DAF •10DAF-2d cold •10 DAF-2d normal •10DAF
176/574
Experiment OS89
Expression data from rice embryo and endosperm development
Submitter:
PLEXdb Curator
Head of Lab:
Hong-Wei Xue
Experiment Factors:
developmental stage name, tissue type name
GeneChip Type:
Rice57k
Experiment design (14 hybridizations)tissue type name •ovary •embryo •endosperm developmental stage name •0 DAF •3 DAF •9 DAF •12 DAF •16 DAF
181/574
Experiment OS84
Differential expression for salt and drought stress
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
strain, stress condition
GeneChip Type:
Rice57k
Experiment design (16 hybridizations)strain •drought sensitive •drought tolerant •salt sensitive •salt tolerant stress condition •drought stress •salt stress •control
182/574
Experiment OS83
Expression profile of high yielding rice introgression line
Submitter:
PLEXdb Curator
Head of Lab:
Sarla Neelamraju
Experiment Factors:
developmental stage name, genetic line
GeneChip Type:
Rice57k
Experiment design (12 hybridizations)genetic line •KMR3 •IL50-7 developmental stage name •flag leaf •panicle
185/574
Experiment OS80
Express data from rice endosperm
Submitter:
PLEXdb Curator
Head of Lab:
Zhaohua Peng
Experiment Factors:
developmental stage name
GeneChip Type:
Rice57k
Experiment design (6 hybridizations)developmental stage name •endosperm •leaf (control)
187/574
Experiment OS78
Expression data from transgenic rice with anti-OsPDCD5
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
genetic line, treatment
GeneChip Type:
Rice57k
Experiment design (6 hybridizations)genetic line •nontransgenic •transgenic treatment •normal (No NaCl) •20mins NaCl •3 hrs NaCl
190/574
Experiment OS75
DNA microarray data from transgenic rice Huahui 1 (HH1) and its parent Minghui 63 (MH63)
Submitter:
PLEXdb Curator
Head of Lab:
Zhi Liu
Experiment Factors:
treatment
GeneChip Type:
Rice57k
Experiment design (60 hybridizations)treatment •HH1-30 •MH63-30 •HH1-60 •MH63-60 •HH1-75 •MH63-75 •HH1-90 •MH63-90 •HH1-HT •MH63-HT •HH1-LT •MH63-LT •HH1-Jxol •MH63-Jxol •HH1-Pxo99 •MH63-Pxo99 •HH1-Rs105 •MH63-Rs105 •HH1-Xv5 •MH63-Xv5
193/574
Experiment OS72
Expression data from PSARK::IPT and wildtype rice plants
Submitter:
PLEXdb Curator
Head of Lab:
Eduardo Blumwald
Experiment Factors:
genotype, stress condition
GeneChip Type:
Rice57k
Experiment design (12 hybridizations)genotype •WT •PSARK::IPT stress condition •well watered •water stressed
198/574
Experiment OS67
Expression data from transgenic rice with OsEATB
Submitter:
PLEXdb Curator
Head of Lab:
Jinshui Yang
Experiment Factors:
genotype
GeneChip Type:
Rice57k
Experiment design (2 hybridizations)genotype •nontransgenic •transgenic
205/574
Experiment OS60
A global analysis of QTLs for expression variations in rice shoot at early seedling stage
Submitter:
PLEXdb Curator
Head of Lab:
Qifa Zhang
Experiment Factors:
genetic line
GeneChip Type:
Rice57k
Experiment design (226 hybridizations)genetic line •001 •004 •005 •006 •007 •009 •012 •013 •014 •015 •016 •017 •018 •019 •020 •022 •023 •026 •027 •030 •039 •042 •047 •048 •053 •054 •059 •062 •066 •068 •071 •072 •077 •080 •081 •082 •083 •084 •086 •087 •089 •090 •095 •099 •101 •103 •105 •106 •109 •111 •112 •114 •118 •123 •125 •129 •131 •133 •134 •137 •139 •140 •141 •145 •147 •149 •150 •151 •152 •154 •155 •156 •159 •160 •161 •162 •163 •164 •165 •167 •169 •173 •175 •178 •180 •183 •184 •185 •186 •187 •191 •192 •193 •195 •197 •198 •199 •203 •204 •205 •206 •209 •210 •215 •216 •219 •232 •236 •238 •241 •Zhenshan 97 •Minghui 63
208/574
Experiment OS56
Expression data from field droughted rice plants
Submitter:
PLEXdb Curator
Head of Lab:
Adam H Price
Experiment Factors:
cultivar, stress condition
GeneChip Type:
Rice57k
Experiment design (12 hybridizations)stress condition •control •drought cultivar •Azucena •Bala
209/574
Experiment OS55
Rice leaf transcriptome from 6 week old plants
Submitter:
PLEXdb Curator
Head of Lab:
Pamela C. Ronald
Experiment Factors:
cultivar
GeneChip Type:
Rice57k
Experiment design (3 hybridizations)cultivar •Kitaake
216/574
Experiment OS48
Temporal regulatory role of miR156 during leaf ontogenesis
Submitter:
PLEXdb Curator
Head of Lab:
Lizhong Xiong
Experiment Factors:
genotype, tissue type name
GeneChip Type:
Rice57k
Experiment design (12 hybridizations)tissue type name •younger leaves(L1) •older leaves(L4-5) genotype •miR156 •wildtype
218/574
Experiment OS46
Rice expression atlas: Plant reproductive process
Submitter:
PLEXdb Curator
Head of Lab:
Nori Kurata
Experiment Factors:
tissue type name
GeneChip Type:
Rice57k
Experiment design (98 hybridizations)tissue type name •Anther at An1 •Anther at Mei1 •Anther at M1 •Anther at M2 •Anther at M3 •Anther at P1 •Anther at P2 •Anther at P3 •Stigma control •Ovary control •Pollinating stigma •Pollinating ovary •Pollen tube growth •Fertilization •Zygote formation •Embryosac control_bottom •embryosac_bottom 1 DAP •embryosac_bottom 2 DAP •embryosac_bottom 3 DAP •embryosac_bottom 4 DAP •Embryosac control_top •embryosac_top 1 DAP •embryosac_top 2 DAP •embryosac_top 3 DAP •embryosac_top 4 DAP •Growing callus •Regenerating callus 2 days •Regenerating callus 4 days •Regenerating callus 6 days •Regenerating callus 8 days •Root •Shoot •Young leaf
219/574
Experiment OS45
Rice expression atlas (4): Vegetative tissues
Submitter:
PLEXdb Curator
Head of Lab:
Nori Kurata
Experiment Factors:
tissue type name
GeneChip Type:
Rice57k
Experiment design (25 hybridizations)tissue type name •growing callus •regenerating callus 2d •regenerating callus 4d •regenerating callus 6d •regenerating callus 8d •root •shoot •young leaf
220/574
Experiment OS44
Rice expression atlas (3): Early embryogenesis
Submitter:
PLEXdb Curator
Head of Lab:
Nori Kurata
Experiment Factors:
organism part name, time
GeneChip Type:
Rice57k
Experiment design (27 hybridizations)organism part name •embryo sac bottom •embryo sac top time •control •1 DAP •2 DAP •3 DAP •4 DAP
221/574
Experiment OS43
Rice expression atlas (2): Pollination - Fertilization
Submitter:
PLEXdb Curator
Head of Lab:
Nori Kurata
Experiment Factors:
tissue type name
GeneChip Type:
Rice57k
Experiment design (20 hybridizations)tissue type name •Stigma control •Ovary control •Pollinating stigma •Pollinating ovary •Pollen tube growth •Fertilization •Zygote formation
222/574
Experiment OS42
Rice expression atlas (1): Anther development
Submitter:
PLEXdb Curator
Head of Lab:
Nori Kurata
Experiment Factors:
developmental stage name
GeneChip Type:
Rice57k
Experiment design (26 hybridizations)developmental stage name •Anther An1 •Anther Mei1 •Anther M1 •Anther M2 •Anther M3 •Anther P1 •Anther P2 •Anther P3
223/574
Experiment OS41
Expression data from rice genotypes FL478 and IR29
Submitter:
PLEXdb Curator
Head of Lab:
Harkamal Walia
Experiment Factors:
genotype, stress condition
GeneChip Type:
Rice57k
Experiment design (11 hybridizations)genotype •FL478 •IR29 stress condition •control •salt
227/574
Experiment OS37
Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice
Submitter:
PLEXdb Curator
Head of Lab:
Bin-Ying Fu and Zhi-Kang Li
Experiment Factors:
developmental stage name, stress condition, tissue type name
GeneChip Type:
Rice57k
Experiment design (36 hybridizations)stress condition •control •drought tissue type name •leaves •roots •panicle developmental stage name •tillering stage •panicle elongation stage •booting stage
232/574
Experiment OS32
Dissecting the developmental transcriptomes of rice
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
cultivar, organism part name
GeneChip Type:
Rice57k
Experiment design (190 hybridizations)cultivar •Minghui63 •Zhenshan97 organism part name •callus1 •callus2 •callus3 •callus4 •callus5 •callus6 •callus7 •callus8 •germinating_seed •plumule1 •radicle1 •plumule2 •radicle2 •seedling3 •seedling4 •seedling5 •shoot •root •leaf1 •sheath1 •leaf2 •sheath2 •panicle4 •stem1 •leaf3 •stem2 •panicle5 •palea/lemma •stamen •spikelet •endosperm1 •endosperm2 •endosperm3 •leaf4 •seedling1 •seedling2 •panicle1 •panicle2 •panicle3
236/574
Experiment OS28
Rice seedling hormone treatment
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
treatment
GeneChip Type:
Rice57k
Experiment design (6 hybridizations)treatment •control •IAA treated •BAP treated
238/574
Experiment OS26
Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
genotype
GeneChip Type:
Rice57k
Experiment design (17 hybridizations)genotype •mutant_d1 •mutant_d256 •mutant_d1137 •mutant_d2943 •mutant_g282 •mutant_g650 •mutant_g6485 •mutant_g6489 •mutant_g6603 •mutant_g6686 •mutant_g6728 •mutant_g7534 •mutant_g9799 •mutant_g6989 •mutant_f1856 •mutant_f2045 •wildtype_control
239/574
Experiment OS25
Expression data for heat shock in rice seedlings
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
stress condition
GeneChip Type:
Rice57k
Experiment design (6 hybridizations)stress condition •control •heat shock
242/574
Experiment OS22
antiOsLIC collar chip
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
antisense transgenic
GeneChip Type:
Rice57k
Experiment design (2 hybridizations)antisense transgenic •wildtype_control •antiOcLIC
248/574
Experiment OS16
Genome-wide gene expression profiling of rice stigma
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
organism part name
GeneChip Type:
Rice57k
Experiment design (13 hybridizations)organism part name •stigma •ovary •suspension cultured cells •seedling shoot •seedling root •mature anther •embryo 10day •endosperm 10day •seed 5DAP
251/574
Experiment OS13
Gene expression in OsRR6-overexpression line
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
genetic line
GeneChip Type:
Rice57k
Experiment design (4 hybridizations)genetic line •control •OsRR6-overexpressor
252/574
Experiment OS12
Cytokinin responsive genes in rice
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
compound, organism part name, time
GeneChip Type:
Rice57k
Experiment design (24 hybridizations)organism part name •root •leaf compound •DMSO •tZeatin time •30 mins •120 mins
259/574
Experiment OS5
Expression data for reproductive development in rice
Submitter:
PLEXdb Curator
Experiment Factors:
developmental stage name
GeneChip Type:
Rice57k
Experiment design (45 hybridizations)developmental stage name •Root, 7-day-old Seedling •Mature leaf •Y Leaf •SAM •Young inflorescence (P1, upto 3 cm) •Inflorescence (P2, 3 - 5 cm) •Inflorescence (P3, 5 - 10 cm) •Inflorescence (P4, 10 - 15 cm) •Inflorescence (P5, 15 - 22 cm) •Inflorescence (P6, 22 - 30 cm) •Seed (S1, 0 - 2 dap) •Seed (S2, 3 - 4 dap) •Seed (S3, 5 - 10 dap) •Seed (S4, 11 - 20 dap) •Seed (S5, 21 - 29 dap)
263/574
Experiment OS1
Rice 57K Affymetrix GeneChip Test
Submitter:
Lishuang Shen
Head of Lab:
Timothy Close
Experiment Factors:
dose
GeneChip Type:
Rice57k
Experiment design (6 hybridizations)dose •HiSpike •LowSpike
NineFungalArray_Fus_oxy
NineFungalArray_Fus_gra
NineFungalArray_Fus_ver
NineFungalArray_Ust_may
NineFungalArray_Fus_gra
Medicago61k
269/574
Experiment ME27
affy_med_2011_06-Analysis of the Medicago noot mutant
Submitter:
PLEXdb Curator
Head of Lab:
Claire Lurin
Experiment Factors:
inoculation
GeneChip Type:
Medicago61k
Experiment design (10 hybridizations)inoculation •WT root uninoculated •WT nodules inoculated •noot NF2717 nodules inoculated •noot Tnk507 nodules inoculated
270/574
Experiment ME26
plant genotype x rhizobium genotype interaction
Submitter:
PLEXdb Curator
Head of Lab:
Katy D Heath
Experiment Factors:
genotype, pathogen strains
GeneChip Type:
Medicago61k
Experiment design (12 hybridizations)genotype •Naut1 •Sals4 pathogen strains •SalsB •SalsC
287/574
Experiment ME9
Molecular analysis of heterosis in alfalfa
Submitter:
PLEXdb Curator
Head of Lab:
Sergio Arcioni
Experiment Factors:
genetic line
GeneChip Type:
Medicago61k
Experiment design (9 hybridizations)genetic line •B2xB5 hybrid •B2 parent •B5 parent
288/574
Experiment ME8
Transcriptome Profiles of Medicago Stem Internodes
Submitter:
PLEXdb Curator
Head of Lab:
John W Gronwald
Experiment Factors:
developmental stage name, genetic line
GeneChip Type:
Medicago61k
Experiment design (12 hybridizations)genetic line •252 •1283 developmental stage name •elongating internode •post-elongation
289/574
Experiment ME7
Effects of salt stress on Medicago truncatula seedlings
Submitter:
PLEXdb Curator
Head of Lab:
Daofeng Li
Experiment Factors:
growth condition, time
GeneChip Type:
Medicago61k
Experiment design (18 hybridizations)growth condition •hydroponics(200mM) •petridish(180 mM) time •0 hrs •1 hrs •2 hrs •5 hrs •6 hrs •10 hrs •24 hrs •48 hrs
295/574
Experiment ME1
The Medicago truncatula Gene Expression Atlas
Submitter:
Hong Lu
Head of Lab:
Michael K. Udvardi
Experiment Factors:
organism part name
GeneChip Type:
Medicago61k
Experiment design (54 hybridizations)organism part name •Flower •Leaf •Nod4d •Nod10d •Nod14d •Nodule •Petiole •Pod •Root •Root-0d •Seed10d •Seed12d •Seed16d •Seed20d •Seed24d •Seed36d •Stem •VegetativeBud
tomato10k
296/574
Experiment LE22
Molecular analysis of a tomato OGDH antisense line
Submitter:
PLEXdb Curator
Head of Lab:
Mark Stitt
Experiment Factors:
genotype
GeneChip Type:
tomato10k
Experiment design (8 hybridizations)genotype •OGDH antisense •M82 wildtype
297/574
Experiment LE21
Microarray analysis of gene expression from different developmental stages of the tomato fruit
Submitter:
PLEXdb Curator
Head of Lab:
Tamas Dalmay
Experiment Factors:
developmental stage name
GeneChip Type:
tomato10k
Experiment design (10 hybridizations)developmental stage name •closed bud before flower blooming •open flower •fruit 1-3mm •fruit 5-7mm •fruit 11-14mm •mature green fruit •breaker stage fruit •3d post breaker •5d post breaker •7d post breaker
298/574
Experiment LE20
Microarray analysis of gene expression under different light conditions
Submitter:
PLEXdb Curator
Head of Lab:
Atsushi Fukushima
Experiment Factors:
developmental stage name, light, time
GeneChip Type:
tomato10k
Experiment design (20 hybridizations)developmental stage name •leaf •pericarp light •0 PPF •200 PPF •1000 PPF time •0 weeks •1 weeks •2 weeks
310/574
Experiment LE8
Expression data from PSARK::IPT Nicotiana and wildtype plants
Submitter:
PLEXdb Curator
Head of Lab:
Eduardo Blumwald
Experiment Factors:
genetic line, stress condition
GeneChip Type:
tomato10k
Experiment design (12 hybridizations)genetic line •wildtype •transgenic PSARK::IPT stress condition •well-watered •water stressed
311/574
Experiment LE7
Expression data from various tomato plant tissues
Submitter:
PLEXdb Curator
Head of Lab:
Koh Aoki
Experiment Factors:
tissue type name
GeneChip Type:
tomato10k
Experiment design (67 hybridizations)tissue type name •Micro-Tom root •Micro-Tom hypocotyl •Micro-Tom cotyledon •Micro-Tom 3rd leaves 3wk •Micro-Tom all leaves 3wk •Micro-Tom all leaves 5wk •Micro-Tom flesh mature green fruit •Micro-Tom flesh yellow fruit •Micro-Tom flesh orange fruit •Micro-Tom flesh red fruit •Micro-Tom peel mature green fruit •Micro-Tom peel yellow fruit •Micro-Tom peel orange fruit •Micro-Tom peel red fruit •Aft flesh mature green fruit •Aft flesh red fruit •Aft peel of mature green fruit •Aft peel of red fruit •Line27859 flesh mature green fruit •Line27859 flesh red fruit •Line27859 peel mature green fruit •Line27859 peel red fruit •Momotaro8 flesh red fruit •Momotaro8 peel red fruit
312/574
Experiment LE6
tomato salt response
Submitter:
PLEXdb Curator
Head of Lab:
Xuejun Hua
Experiment Factors:
strain, treatment
GeneChip Type:
tomato10k
Experiment design (12 hybridizations)treatment •unstressed •salt stressed strain •tolerant P12365967 •moneymaker
313/574
Experiment LE5
Gene regulation in parthenocarpic tomato fruit
Submitter:
PLEXdb Curator
Head of Lab:
Abhaya M Dandekar
Experiment Factors:
genetic line
GeneChip Type:
tomato10k
Experiment design (17 hybridizations)genetic line •wildtype with seeds •wildtype seeds removed •INO-laaM •DefH9-laaM •INO-RolB •DefH9-RolB
314/574
Experiment LE3
Expression data of tomato fruit responses to Botrytis cinerea
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
fruit stage, pathogen infection
GeneChip Type:
tomato10k
Experiment design (18 hybridizations)fruit stage •mature green •red ripe pathogen infection •healthy •mock inoculated •B. Cinerea inoculated
316/574
Experiment LE1
Trafficking of mRNA from tomato to dodder
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
parasite
GeneChip Type:
tomato10k
Experiment design (10 hybridizations)parasite •Tomato host tissue •Dodder_Tomato •Dodder_Arabidopsis(control) •Dodder_Tobacco(control) •Dodder_Pumpkin(control)
Cotton
Soybean
329/574
Experiment GM53
Transcriptome during autoregulation of mycorrhization in soybean
Submitter:
Sara Schaarschmidt
Head of Lab:
Dr. Florian Wagner
Experiment Factors:
genotype, inoculation, tissue type name
GeneChip Type:
Soybean
Experiment design (30 hybridizations)genotype •Bragg wt •nts1007 inoculation •minus •plus tissue type name •root-parts AB •root-part A (myc) •root-part B (non-myc) •shoot
331/574
Experiment GM51
Response of Rpp4-silenced plants to soybean rust
Submitter:
Steve Whitham
Head of Lab:
Michelle Graham
Experiment Factors:
treatment
GeneChip Type:
Soybean
Experiment design (5 hybridizations)treatment •BPMV-LRR •BPMV empty vector
332/574
Experiment GM50
The effects of bud removal on soybean leaf gene expression.
Submitter:
PLEXdb Curator
Head of Lab:
Markus Lange
Experiment Factors:
time
GeneChip Type:
Soybean
Experiment design (22 hybridizations)time •control 0 days •control 15 days •detip 15 days •control 20 days •detip-retip 20 days •control 30 days •detip-retip 30 days
337/574
Experiment GM41
Expression data of Soybean root apical meristem and leaf
Submitter:
PLEXdb Curator
Head of Lab:
Prem Bhalla
Experiment Factors:
tissue type name
GeneChip Type:
Soybean
Experiment design (5 hybridizations)tissue type name •root apical meristem •leaf non-meristematic
341/574
Experiment GM37
Molecular characterization of the Rpp4 resistance response
Submitter:
Steve Whitham
Head of Lab:
Steve Whitham
Experiment Factors:
genotype, pathogen inoculation, time
GeneChip Type:
Soybean
Experiment design (72 hybridizations)genotype •Williams •PI459025B pathogen inoculation •Mock •Hawaii 94-1 time •12 hai •24 hai •72 hai •144 hai •216 hai •288 hai
347/574
Experiment GM31
Circadian clock controlled gene expression in soybean seeds
Submitter:
PLEXdb Curator
Head of Lab:
Karen A Hudson
Experiment Factors:
time
GeneChip Type:
Soybean
Experiment design (26 hybridizations)time •24 hrs •28 hrs •32 hrs •36 hrs •40 hrs •44 hrs •48 hrs •52 hrs •56 hrs •60 hrs •64 hrs •68 hrs •72 hrs
352/574
Experiment GM26
Analysis of Iron Deficiency in Soybean Leaf Tissue
Submitter:
PLEXdb Curator
Head of Lab:
Randy Shoemaker
Experiment Factors:
genotype, stress condition
GeneChip Type:
Soybean
Experiment design (11 hybridizations)genotype •Clark •IsoClark stress condition •Iron Sufficient •Iron Defficient
356/574
Experiment GM22
Suppression of oleosin in soybean cotyledon
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
genetic line
GeneChip Type:
Soybean
Experiment design (6 hybridizations)genetic line •wildtype •transgenic RNAiOleosin
367/574
Experiment GM11
Soy LGI Protein NILs, seed fill
Submitter:
Yung-Tsi Bolon
Head of Lab:
Carroll Vance
Experiment Factors:
genotype, time
GeneChip Type:
Soybean
Experiment design (24 hybridizations)genotype •LoProt •HiProt time •25-50 •>50-100 •>100-200 •>200-300
368/574
Experiment GM10
Genomics of Soybean Seed Development Using Laser Capture Microdissection (Submitted by Julie Dickerson, PLEXdb Team)
Submitter:
Julie A Dickerson
Head of Lab:
Bob Goldberg
Experiment Factors:
developmental stage name, tissue type name
GeneChip Type:
Soybean
Experiment design (69 hybridizations)developmental stage name •Globular Stage Embryo •Heart-Stage Embryo •Cotyledon-stage Embryo tissue type name •Whole Seed •Young Trifolate Leaf •Embryo proper (LCM) •Endosperm (LCM) •Endothelium (LCM) •Epidermis (LCM) •Hilum (LCM) •Inner integument (LCM) •Outer integument (LCM) •Suspensor (LCM)
Fusarium
374/574
Experiment FG16
Fusarium graminearum gene expression in wheat stems during infection
Submitter:
Heather E Hallen
Head of Lab:
Frances Trail
Experiment Factors:
developmental stage name
GeneChip Type:
Fusarium
Experiment design (12 hybridizations)developmental stage name •IF - vegetative hyphae •RW - wide dikaryotic hyphae •SW - perithecial initials •YP - young perithecia
375/574
Experiment FG15
F. graminearum gene expression during wheat head blight
Submitter:
Erik Lysøe
Head of Lab:
H. Corby Kistler (CDL)
Experiment Factors:
time
GeneChip Type:
Fusarium
Experiment design (21 hybridizations)time •0 hrs •24 hrs •48 hrs •72 hrs •96 hrs •144 hrs •192 hrs
376/574
Experiment FG14
DON induction media
Submitter:
Donald Max Gardiner
Head of Lab:
John Manners
Experiment Factors:
growth condition
GeneChip Type:
Fusarium
Experiment design (8 hybridizations)growth condition •agmatine •glutamine
384/574
Experiment FG4
Fusarium/Barley RNA dilution
Submitter:
Kye-Yong Seong
Experiment Factors:
dilution
GeneChip Type:
Fusarium
Experiment design (5 hybridizations)dilution •original PH1 •1/10 •1/100 •1/1000 •1/10000
385/574
Experiment FG3
Cross-species hybridization
Submitter:
Kye-Yong Seong
Experiment Factors:
cross-species comparison
GeneChip Type:
Fusarium
Experiment design (14 hybridizations)cross-species comparison •F. boothii •F. graminearum •F. asiaticum •F. pseudograminearum •F. oxysporum •F. verticillioides •F. culmorum
Citrus
389/574
Experiment CT10
Transcriptional analysis of epithelial cells in grapefruit peel
Submitter:
PLEXdb Curator
Head of Lab:
Bernd Markus Lange
Experiment Factors:
cell type name, fruit stage
GeneChip Type:
Citrus
Experiment design (12 hybridizations)cell type name •epithelial cell •parenchyma cell fruit stage •28mm •41mm
396/574
Experiment CT3
Transcriptional Analysis of Rind Separation in Mandarin Oranges
Submitter:
PLEXdb Curator
Head of Lab:
Timothy J Close
Experiment Factors:
developmental stage name, genetic line
GeneChip Type:
Citrus
Experiment design (16 hybridizations)genetic line •Clementine Nules •Lee X Nova developmental stage name •before rind separation •at rind separation •after rind separation
398/574
Experiment CT1
Lemon_acidity
Submitter:
Mikeal Roose
Head of Lab:
Mikeal L. Roose
Experiment Factors:
developmental stage, genotype
GeneChip Type:
Citrus
Experiment design (18 hybridizations)genotype •Faris sweet lemon •Faris acid lemon •Frost Lisbon lemon developmental stage •PO:0007009 FF.01 fruit size 30%, •PO:0007050 FR.03 late stage of fruit ripening,
Brachy
399/574
Experiment BD3
Brachy leaf, root, and stem
Submitter:
Samuel P Hazen
Head of Lab:
Sam Hazen
Experiment Factors:
tissue type name
GeneChip Type:
Brachy
Experiment design (9 hybridizations)tissue type name •leaf •root •stem
400/574
Experiment BD2
Brachypodium Abiotic Stress Gene Expression
Submitter:
jessica robyn murray
Head of Lab:
Todd Mockler
Experiment Factors:
time, treatment
GeneChip Type:
Brachy
Experiment design (119 hybridizations)treatment •Salt •Salt Control •Drought •Drought Control •High Light •Cold •Heat •Control (High Light, Cold, Heat) time •1 hrs •2 hrs •5 hrs •10 hrs •24 hrs
401/574
Experiment BD1
Brachypodium Diurnal/Circadian Gene Expression
Submitter:
jessica robyn murray
Head of Lab:
Todd Mockler
Experiment Factors:
diurnalcourse, growth condition, time
GeneChip Type:
Brachy
Experiment design (78 hybridizations)growth condition •Diurnal •Circadian_LLHH diurnalcourse •LDHH •LDHC •LLHC time •0 hrs •4 hrs •8 hrs •12 hrs •16 hrs •20 hrs •24 hrs •28 hrs •32 hrs •36 hrs •40 hrs •44 hrs •48 hrs
Barley1
404/574
Experiment BB106
Barley Germination and Seedling Growth Time Course
Submitter:
PLEXdb Curator
Head of Lab:
Yong-qiang An
Experiment Factors:
developmental stage name
GeneChip Type:
Barley1
Experiment design (18 hybridizations)developmental stage name •stage S0 •stage S1 •stage S2 •stage S3 •stage S4 •stage S5
406/574
Experiment BB104
Diurnal expression data from developing barley caryopses
Submitter:
PLEXdb Curator
Head of Lab:
Elke Mangelsen
Experiment Factors:
time
GeneChip Type:
Barley1
Experiment design (12 hybridizations)time •1h(dark) •9h(dark) •10h(light) •17h(light) •20h(light) •23h(light)
407/574
Experiment BB103
Microarray data from barley aleurone
Submitter:
PLEXdb Curator
Head of Lab:
Yong-Qiang Charles An
Experiment Factors:
compound, genotype
GeneChip Type:
Barley1
Experiment design (15 hybridizations)compound •untreated •GA •ABA •GA plus ABA genotype •control •sln1 mutant
408/574
Experiment BB102
Heat stress expression data from developing barley caryopses
Submitter:
PLEXdb Curator
Head of Lab:
Elke Mangelsen
Experiment Factors:
stress condition, time
GeneChip Type:
Barley1
Experiment design (12 hybridizations)stress condition •control •heat stress time •0.5 hrs •3 hrs •6 hrs
410/574
Experiment BB96
Genetic regulation of barley gene expression in response to the powdery mildew fungus, Blumeria graminis f. sp. hordei (Bgh)
Submitter:
Greg S Fuerst
Head of Lab:
Roger P. Wise
Experiment Factors:
genotype, time
GeneChip Type:
Barley1
Experiment design (168 hybridizations)genotype •Q21861 •SM89010 •QxSM001 •QxSM002 •QxSM003 •QxSM005 •QxSM008 •QxSM010 •QxSM011 •QxSM013 •QxSM014 •QxSM015 •QxSM016 •QxSM017 •QxSM018 •QxSM019 •QxSM023 •QxSM026 •QxSM028 •QxSM029 •QxSM030 •QxSM031 •QxSM033 •QxSM034 •QxSM035 •QxSM036 •QxSM037 •QxSM038 •QxSM039 •QxSM041 •QxSM042 •QxSM043 •QxSM045 •QxSM046 •QxSM047 •QxSM048 •QxSM049 •QxSM050 •QxSM052 •QxSM054 •QxSM055 •QxSM056 •QxSM057 •QxSM058 •QxSM059 •QxSM060 •QxSM061 •QxSM062 •QxSM063 •QxSM065 •QxSM066 •QxSM067 •QxSM068 •QxSM069 •QxSM070 •QxSM073 •QxSM074 •QxSM075 •QxSM076 •QxSM077 •QxSM078 •QxSM079 •QxSM080 •QxSM082 •QxSM083 •QxSM084 •QxSM085 •QxSM086 •QxSM087 •QxSM088 •QxSM089 •QxSM090 •QxSM091 •QxSM093 •QxSM094 •QxSM095 •QxSM097 •CI 16137 time •16 hai •32 hai
411/574
Experiment BB95
Long term cold responses in a winter barley
Submitter:
Aaron G Greenup
Head of Lab:
Ben Trevaskis
Experiment Factors:
treatment
GeneChip Type:
Barley1
Experiment design (6 hybridizations)treatment •Non-vernalized •Post-vernalized
412/574
Experiment BB94
Short and long term cold responses in a winter barley
Submitter:
Aaron G Greenup
Head of Lab:
Ben Trevaskis
Experiment Factors:
treatment
GeneChip Type:
Barley1
Experiment design (12 hybridizations)treatment •Non-vernalized •Short-term cold •Vernalized •1 day post-vernalized
413/574
Experiment BB93
Over-expression of ODDSOC2 in Golden Promise
Submitter:
Aaron G Greenup
Head of Lab:
Ben Trevaskis
Experiment Factors:
genotype
GeneChip Type:
Barley1
Experiment design (6 hybridizations)genotype •Wild-Type •Over-expression
415/574
Experiment BB91
Transcriptome analysis of a breeding program pedigree
Submitter:
Maria Muñoz
Head of Lab:
Gary J. Muehlbauer
Experiment Factors:
genotype, time
GeneChip Type:
Barley1
Experiment design (90 hybridizations)genotype •Bonanza •Cree •Dickson •Excel •Lacey •M1 •M44 •M46 •M55 •M66 •M78 •Manker •Morex •Robust •Stander time •0 days •3 days
416/574
Experiment BB89
Gene expression in the barley spike during drought stress
Submitter:
Tilahun Abebe
Head of Lab:
Dr. Tilahun Abebe
Experiment Factors:
stress condition, tissue type name
GeneChip Type:
Barley1
Experiment design (24 hybridizations)stress condition •Control •Drought stress tissue type name •Lemma •Palea •Awn •Seed
418/574
Experiment BB87
Expression data from malting barley seeds
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
genotype, treatment
GeneChip Type:
Barley1
Experiment design (22 hybridizations)genotype •Morex •Legacy •Merit •Harrington treatment •ungerminated •steeped •1d •4d •kilned
419/574
Experiment BB86
Expression data from barley germinating grains (Part 2 of 2)
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
organism part name, time
GeneChip Type:
Barley1
Experiment design (16 hybridizations)organism part name •endosperm •embryo time •0 hrs •24 hrs •48 hrs •72 hrs
420/574
Experiment BB85
Expression data from barley maturing grains (Part 1 of 2)
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
organism part name, time
GeneChip Type:
Barley1
Experiment design (16 hybridizations)organism part name •pericarp •endosperm •embryo time •4 DAF •8 DAF •16 DAF •25 DAF
422/574
Experiment BB83
Mercury toxicity in barley roots
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
treatment
GeneChip Type:
Barley1
Experiment design (6 hybridizations)treatment •control •mercury
424/574
Experiment BB81
Low temperature stress in cv. Dicktoo
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
cold stress
GeneChip Type:
Barley1
Experiment design (12 hybridizations)cold stress •control •chilling •subzero •deacclimation
425/574
Experiment BB80
ABA experiment
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
ABA treatment
GeneChip Type:
Barley1
Experiment design (9 hybridizations)ABA treatment •ABA_control •ABA_early •ABA_late
426/574
Experiment BB79
P. aeruginosa virulent factor to barley
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
pathogen infection
GeneChip Type:
Barley1
Experiment design (3 hybridizations)pathogen infection •PAO1 •PA5021 •control
428/574
Experiment BB77
Barley single feature polymorphisms and drought stress gene expression
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
genotype, stress condition
GeneChip Type:
Barley1
Experiment design (21 hybridizations)genotype •Barke •Morex •Steptoe •OWB_Dominant •OWB_Recessive stress condition •Unstressed •Drought_Stressed •Pooled_Stressed_Unstressed
436/574
Experiment BB64
Genetic regulation of gene expression of barley in response to stem rust (Pgt isolate TTKS)
Submitter:
Roger P Wise
Head of Lab:
Roger Wise
Experiment Factors:
genetic line, treated or untreated
GeneChip Type:
Barley1
Experiment design (166 hybridizations)genetic line •Q21861 •SM89010 •QxSM001 •QxSM002 •QxSM003 •QxSM005 •QxSM008 •QxSM010 •QxSM011 •QxSM013 •QxSM014 •QxSM015 •QxSM016 •QxSM017 •QxSM018 •QxSM019 •QxSM023 •QxSM026 •QxSM028 •QxSM029 •QxSM030 •QxSM031 •QxSM033 •QxSM034 •QxSM035 •QxSM036 •QxSM037 •QxSM038 •QxSM039 •QxSM041 •QxSM042 •QxSM043 •QxSM045 •QxSM046 •QxSM047 •QxSM048 •QxSM049 •QxSM050 •QxSM052 •QxSM054 •QxSM055 •QxSM056 •QxSM057 •QxSM058 •QxSM059 •QxSM060 •QxSM061 •QxSM062 •QxSM063 •QxSM065 •QxSM066 •QxSM067 •QxSM068 •QxSM069 •QxSM070 •QxSM073 •QxSM074 •QxSM075 •QxSM076 •QxSM077 •QxSM078 •QxSM079 •QxSM080 •QxSM082 •QxSM083 •QxSM084 •QxSM085 •QxSM086 •QxSM087 •QxSM088 •QxSM089 •QxSM090 •QxSM091 •QxSM093 •QxSM094 •QxSM095 •QxSM097 treated or untreated •Inoculated - Pgt TTKS •Mock
437/574
Experiment BB63
Late response to boron toxicity in barley leaves
Submitter:
tufan mehmet oz
Head of Lab:
Prof. Dr. Huseyin Avni OKTEM & Prof. Dr. Meral YUCEL, haoktem@metu.edu.tr, meraly@metu.edu.tr
Experiment Factors:
treated or untreated
GeneChip Type:
Barley1
Experiment design (9 hybridizations)treated or untreated •Control (C) •5 mM B(OH)3 treatment (5B) •10 mM B(OH)3 treatment (10B)
441/574
Experiment BB54
Necrotic mutants in barley cv. Steptoe
Submitter:
ling zhang
Experiment Factors:
line
GeneChip Type:
Barley1
Experiment design (15 hybridizations)line •nad1-1 •nad1-2 •nad1-3 •nad1-4 (FN242) •Steptoe
445/574
Experiment BB49
barley stem rust interaction
Submitter:
ling zhang
Experiment Factors:
genotype, pathogen isolates, time
GeneChip Type:
Barley1
Experiment design (68 hybridizations)genotype •GP •Rpg1 transgenic pathogen isolates •mcc •qcc time •0 •6 •12 •18 •24 •36
446/574
Experiment BB47
Transcriptome analysis of Bowman vs 4 tillering mutants at 4 developmental stages
Submitter:
Seungho Cho
Head of Lab:
Muehlbauer
Experiment Factors:
developmental stage, genotype
GeneChip Type:
Barley1
Experiment design (60 hybridizations)developmental stage •young seedling •crown •immature inflorescence •immature embryo genotype •Bowman •als-Bowman •lnt-Bowman •cul2-Bowman •cul4-Bowman
450/574
Experiment BB21
Genetics of gene expression in barley
Submitter:
Arnis Druka
Experiment Factors:
genetic line
GeneChip Type:
Barley1
Experiment design (41 hybridizations)genetic line •SM004 •SM007 •SM012 •SM013 •SM022 •SM024 •SM027 •SM041 •SM043 •SM044 •SM046 •SM061 •SM063 •SM073 •SM074 •SM079 •SM085 •SM088 •SM089 •SM116 •SM130 •SM135 •SM136 •SM140 •SM141 •SM146 •SM152 •SM155 •SM160 •SM167 •SM169 •SM173 •SM177 •SM184 •SM200 •Steptoe •Morex
451/574
Experiment BB20
Genotype-dependent gene expression in barley
Submitter:
Arnis Druka
Experiment Factors:
genotype
GeneChip Type:
Barley1
Experiment design (24 hybridizations)genotype •Morex •Steptoe •OWB REC •OWB DOM •Barke •Haruna Nijo •Golden Promise •Optic
452/574
Experiment BB16
Steptoe x Morex seedling leaf comparison
Submitter:
Roger P Wise
Head of Lab:
Roger Wise
Experiment Factors:
genotype
GeneChip Type:
Barley1
Experiment design (6 hybridizations)genotype •Steptoe •Morex
456/574
Experiment BB7
mlo5-mediated resistance responses in barley
Submitter:
Achim Fischer
Experiment Factors:
disease type, genotype
GeneChip Type:
Barley1
Experiment design (4 hybridizations)disease type •Control •Treated (Pathogen Infection) genotype •Mlo •mlo5
458/574
Experiment BB4
Mla-specified Transcriptional Responses in Barley-Powdery Mildew Interactions
Submitter:
Rico A. Caldo
Head of Lab:
Roger P Wise
Experiment Factors:
genotype, pathogen isolates, time
GeneChip Type:
Barley1
Experiment design (108 hybridizations)genotype •CI 16137 (Mla1) •CI 16151 (Mla6) •CI 16155 (Mla13) pathogen isolates •Bgh 5874 •Bgh K1 time •0 hai •8 hai •16 hai •20 hai •24 hai •32 hai
459/574
Experiment BB3
Transcription patterns during barley development
Submitter:
Arnis Druka
Experiment Factors:
genotype, tissue type
GeneChip Type:
Barley1
Experiment design (63 hybridizations)genotype •Morex •Golden Promise tissue type •germinating seed, coleoptyle •germinating seed, radicle •germinating seed, embryo •seedling, root •seedling, crown •seedling, leaf •immature, inflorescence •floral bracts, before anthesis •pistil, before anthesis •anthers, before anthesis •5 DAP caryopsis •10 DAP caryopsis •16 DAP caryopsis •22 DAP embryo •22 DAP endosperm
461/574
Experiment BB1
Cross-species Detection in Barley1 GeneChip Array
Submitter:
Rico A. Caldo
Head of Lab:
Roger P Wise
Experiment Factors:
species
GeneChip Type:
Barley1
Experiment design (12 hybridizations)species •Barley •Wheat •Oat •Sorghum •Corn •Rice
ATH1-121501
466/574
Experiment AT139
Expression data from low R:FR - JA crosstalk in Arabidopsis
Submitter:
PLEXdb Curator
Head of Lab:
Carlos L. Ballare
Experiment Factors:
growth regulator, light
GeneChip Type:
ATH1-121501
Experiment design (12 hybridizations)light •high R/FR •low R/FR growth regulator •mock •JA
470/574
Experiment AT135
SA, elf18 treatment of WT and tbf1 mutant
Submitter:
PLEXdb Curator
Head of Lab:
Xinnian Dong
Experiment Factors:
genotype, treatment
GeneChip Type:
ATH1-121501
Experiment design (24 hybridizations)genotype •WT •tbf1 mutant treatment •mock SA •SA •mock elf •elf
483/574
Experiment AT122
G3P triggered changes in systemic transcriptome
Submitter:
PLEXdb Curator
Head of Lab:
Pradeep Kachroo
Experiment Factors:
compound
GeneChip Type:
ATH1-121501
Experiment design (6 hybridizations)compound •mock •G3P
487/574
Experiment AT118
H. arabidopsidis EMWA1 infection, time course experiment
Submitter:
PLEXdb Curator
Head of Lab:
Xinnian Dong
Experiment Factors:
genotype, time
GeneChip Type:
ATH1-121501
Experiment design (20 hybridizations)genotype •WT •rpp4 time •0 day •0.5 day •2 days •4 days •6 days
488/574
Experiment AT117
The impact of BRCA2A and SSN2 on plant defense genes
Submitter:
PLEXdb Curator
Head of Lab:
Xinnian Dong
Experiment Factors:
compound, genotype
GeneChip Type:
ATH1-121501
Experiment design (17 hybridizations)genotype •npr1_sni1 •npr1_sni1_brca2a •npr1_sni1_ssn2 compound •water •SA
490/574
Experiment AT115
wt and opr3 control and systemic wounding
Submitter:
PLEXdb Curator
Head of Lab:
Robert Fluhr
Experiment Factors:
genotype, treatment
GeneChip Type:
ATH1-121501
Experiment design (4 hybridizations)genotype •wt •opr3 treatment •control •wounding
496/574
Experiment AT109
Genes regulated by GRF1 and GRF3 in Arabidopsis roots
Submitter:
Tarek Hewezi
Head of Lab:
Thomas Baum
Experiment Factors:
genotype
GeneChip Type:
ATH1-121501
Experiment design (15 hybridizations)genotype •Arabidopsis thaliana ecotypes Col-0 •Arabidopsis thaliana ecotypes WS •Triple mutant grf1/grf2/grf3 •P35S:rGRF1 overexpression •P35S:rGRF3 overexpression
497/574
Experiment AT108
High resolution NO3 response of Arabidopsis Roots
Submitter:
PLEXdb Curator
Head of Lab:
Gloria M Coruzzi
Experiment Factors:
compound, time
GeneChip Type:
ATH1-121501
Experiment design (26 hybridizations)time •0 mins •3 mins •6 mins •9 mins •12 mins •15 mins •20 mins compound •Basal medium •KCl •KNO3
498/574
Experiment AT107
Expression data from Arabidopsis Seed Compartments at 5 discrete stages of development
Submitter:
PLEXdb Curator
Head of Lab:
Robert B. Goldberg
Experiment Factors:
developmental stage name, organism part name
GeneChip Type:
ATH1-121501
Experiment design (87 hybridizations)developmental stage name •globular stage •pre-globular stage •linear-cotyledon stage •heart stage •mature green stage •bending cotyledon stage organism part name •embryo proper •cellularized endosperm •micropylar endosperm •peripheral endosperm •chalazal endosperm •chalazal seed coat •seed coat •whole seeds •suspensor
500/574
Experiment AT105
Expression data from Arabidopsis seed compartments at the mature green stage.
Submitter:
PLEXdb Curator
Head of Lab:
Robert B. Goldberg
Experiment Factors:
organism part name
GeneChip Type:
ATH1-121501
Experiment design (14 hybridizations)organism part name •embryo proper •micropylar endosperm •peripherial endosperm •chalazal endosperm •chalazal seed coat •seed coat •whole seeds
501/574
Experiment AT104
Expression data from Arabidopsis seed compartments at the heart stage.
Submitter:
PLEXdb Curator
Head of Lab:
Robert B. Goldberg
Experiment Factors:
organism part name
GeneChip Type:
ATH1-121501
Experiment design (16 hybridizations)organism part name •embryo proper •micropylar endosperm •peripheral endosperm •chalazal endosperm •chalazal seed coat •general seed coat •whole seeds
502/574
Experiment AT103
Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
Submitter:
PLEXdb Curator
Head of Lab:
Robert B. Goldberg
Experiment Factors:
organism part name
GeneChip Type:
ATH1-121501
Experiment design (14 hybridizations)organism part name •embryo proper •cellularlized endosperm •chalazal endosperm •chalazal seed coat •general seed coat •whole seeds •micropylar endosperm
503/574
Experiment AT102
Expression data from Arabidopsis seed compartments at the pre-globular stage
Submitter:
PLEXdb Curator
Head of Lab:
Robert B. Goldberg
Experiment Factors:
organism part name
GeneChip Type:
ATH1-121501
Experiment design (14 hybridizations)organism part name •embryo proper •micropylar endosperm •peripheral endosperm •chalazal endosperm •chalazal seed coat •general seed coat •whole seed sections
504/574
Experiment AT101
Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
Submitter:
PLEXdb Curator
Head of Lab:
Robert B. Goldberg
Experiment Factors:
organism part name
GeneChip Type:
ATH1-121501
Experiment design (17 hybridizations)organism part name •embryo proper •suspensor •micropylar endosperm •peripheral endosperm •chalazal endosperm •chalazal seed coat •general seed coat •whole seeds
509/574
Experiment AT96
Arabidopsis pvip mutants
Submitter:
PLEXdb Curator
Head of Lab:
Prof. Andy Maule
Experiment Factors:
strain
GeneChip Type:
ATH1-121501
Experiment design (6 hybridizations)strain •Col-0 wildtype •pvip1-pvip2 RNAi
510/574
Experiment AT95
Biological function of Pip3
Submitter:
PLEXdb Curator
Head of Lab:
Dr. Pascal Gamas
Experiment Factors:
genetic line
GeneChip Type:
ATH1-121501
Experiment design (27 hybridizations)genetic line •KO-Pip3 •pGli-69-24 •pGli-69-31 •Pip3-3HA6H-5 •Pip3-3HA6H-1 •Pip3-3HA-9 •Pip3-3HA-1 •Nd-1 •Col-0
511/574
Experiment AT94
Systemic responses to Pseudomonas syringae infection
Submitter:
PLEXdb Curator
Head of Lab:
Prof. Murray Grant
Experiment Factors:
pathogen strain, time
GeneChip Type:
ATH1-121501
Experiment design (27 hybridizations)time •8 hai •12 hai •21 hai pathogen strain •DC3000 wildtype •hrpA mutant •avrRpm1
513/574
Experiment AT92
pad4 vs. pad4 est1b
Submitter:
PLEXdb Curator
Head of Lab:
Karel Riha
Experiment Factors:
strain
GeneChip Type:
ATH1-121501
Experiment design (6 hybridizations)strain •pad4 mutant •pad4 est1b doublemutant
517/574
Experiment AT88
Effect of auxin signaling on flg22 response
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
strain, time, treatment
GeneChip Type:
ATH1-121501
Experiment design (45 hybridizations)strain •Wildtype •AFB1 •miR393 treatment •flg22 •Atum •NAA •NAA/flg time •0 hrs •1 hrs •2 hrs
525/574
Experiment AT80
Laser microdissection of Arabidopsis cells at the powdery mildew infection site
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
genotype, pathogen inoculation, tissue type name
GeneChip Type:
ATH1-121501
Experiment design (16 hybridizations)genotype •Col-0 •eds16 tissue type name •laser microdisected •whole leaf •whole leaf amplified •leaf scrape pathogen inoculation •G-orontii •uninoculated
529/574
Experiment AT76
Transcriptome of mature Arabidopsis thaliana crown galls
Submitter:
PLEXdb Curator
Head of Lab:
Prof. Hedrich
Experiment Factors:
pathogen inoculation
GeneChip Type:
ATH1-121501
Experiment design (8 hybridizations)pathogen inoculation •mock •Agr-tum-C58-inoculated
531/574
Experiment AT74
Golovinomyces orontii time course with Col-0 and eds16-1
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
genotype, pathogen inoculation, time
GeneChip Type:
ATH1-121501
Experiment design (56 hybridizations)genotype •Col-0 •eds16-1 pathogen inoculation •G-orontii •Uninoculated time •0 hai •6 hai •1 dpi •3 dpi •5 dpi •7 dpi
533/574
Experiment AT72
C. fulvum Avr2
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
genetic line
GeneChip Type:
ATH1-121501
Experiment design (6 hybridizations)genetic line •Col-0 •Avr2-transgenic
539/574
Experiment AT66
Systemic response to avirulent bacterial infection
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
pathogen inoculation
GeneChip Type:
ATH1-121501
Experiment design (9 hybridizations)pathogen inoculation •P-syr DC3000 •P-syr DC3000(hrpA) •P-syr DC3000(avrRpm1)
540/574
Experiment AT65
Group II-A WRKY transcription factors and early leaf senescence
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
pathogen inoculation, strain
GeneChip Type:
ATH1-121501
Experiment design (7 hybridizations)strain •Col-0 •WRKY40 •WRKY18 •WRKY60 •WRKY18/40 •WRKY53 pathogen inoculation •Control •Pst-DC3000
543/574
Experiment AT59
Response to Erysiphe orontii infection, time course experiment
Submitter:
PLEXdb Curator
Head of Lab:
Fred Ausubel
Experiment Factors:
pathogen infection, time
GeneChip Type:
ATH1-121501
Experiment design (48 hybridizations)pathogen infection •Inoculated •Non-Inoculated time •6 hai •12 hai •18 hai •24 hai •48 hai •72 hai •96 hai •120 hai
544/574
Experiment AT54
UV-B Responses in Light Grown Plants: Similarities to Biotic Stress
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
treatment
GeneChip Type:
ATH1-121501
Experiment design (6 hybridizations)treatment •A1-UV-B •A2-UV-A •A3-Visible Light •A4-P-parasitica-on-resist •A5-mock water treatment •A6-P-parasitica-on-suscept
546/574
Experiment AT52
Pseudomonas half leaf injection
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
pathogen inoculation, time
GeneChip Type:
ATH1-121501
Experiment design (32 hybridizations)pathogen inoculation •P-syr-avr •P-syr •Mock-MgCl2 •No-treat-control time •0 hrs •4 hrs •8 hrs •16 hrs •24 hrs •48 hrs
547/574
Experiment AT51
Response to Botrytis cinerea infection
Submitter:
PLEXdb Curator
Experiment Factors:
pathogen inoculation, time
GeneChip Type:
ATH1-121501
Experiment design (12 hybridizations)pathogen inoculation •B-Cinerea •Control time •18 hrs •48 hrs
548/574
Experiment AT50
Growth promotion of Arabidopsis by Trichoderma hamatum
Submitter:
PLEXdb Curator
Head of Lab:
Christopher Thornton
Experiment Factors:
pathogen inoculation
GeneChip Type:
ATH1-121501
Experiment design (2 hybridizations)pathogen inoculation •control •Trichoderma
549/574
Experiment AT49
Transcriptome changes of Arabidopsis during pathogen and insect attack
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
pest infestation, time
GeneChip Type:
ATH1-121501
Experiment design (14 hybridizations)pest infestation •control •avrPstDC3000 •Abrassicicola •Prapae •F-occidentalis •M-persicae time •12 hrs •24 hrs •48 hrs •72 hrs
551/574
Experiment AT46
Targets of AtWRKY27 in Arabidopsis leaves
Submitter:
PLEXdb Curator
Head of Lab:
Dr. Imre E. Somssich
Experiment Factors:
genetic line
GeneChip Type:
ATH1-121501
Experiment design (4 hybridizations)genetic line •empty-vect-XVE-SALK •empty-vect-XVE-ETL •WK27-XVE-SALK •WK27-XVE-ETL
552/574
Experiment AT44
Tween 20 inducible genes
Submitter:
PLEXdb Curator
Head of Lab:
--
Experiment Factors:
compound, time
GeneChip Type:
ATH1-121501
Experiment design (6 hybridizations)compound •water •Tween20 time •1 hrs •2.5 hrs
554/574
Experiment AT42
The effect of TuMV on translation initiation in Arabidopsis.
Submitter:
Jackson R Moeller
Head of Lab:
Steve Whitham
Experiment Factors:
pathogen infection, RNA fraction
GeneChip Type:
ATH1-121501
Experiment design (12 hybridizations)pathogen infection •TuMV inoculated •mock inoculated RNA fraction •polysomal RNA •total RNA
555/574
Experiment AT41
Expression Atlas of Arabidopsis Development, Mutants (AtGenExpress)
Submitter:
Hong Lu
Head of Lab:
Detlef Weigel, Jan Lohmann, Markus Schmid
Experiment Factors:
genotype, organism part name
GeneChip Type:
ATH1-121501
Experiment design (60 hybridizations)genotype •Col-0 •ag-12 •ap1-15 •ap2-6 •ap3-6 •clv3-7 •lfy-12 •ufo-1 •gl1T organism part name •flow12 •inflo •roset4_1l •roset12
556/574
Experiment AT40
Expression Atlas of Arabidopsis Development (AtGenExpress)
Submitter:
Hong Lu
Head of Lab:
Detlef Weigel, Jan Lohmann, Markus Schmid
Experiment Factors:
organism part name
GeneChip Type:
ATH1-121501
Experiment design (189 hybridizations)organism part name •Col-0_cotyl •Col-0_hyp •Col-0_root7 •Col-0_veg_leaf •Col-0_leaf_1-2 •Col-0_shoot_veg •Col-0_seedl_green •Col-0_shoot_trans •Col-0_root17 •Col-0_roset4_1l •Col-0_roset2 •Col-0_roset4 •Col-0_roset6 •Col-0_roset8 •Col-0_roset10 •Col-0_roset12 •Col-0_lf7_petio •Col-0_lf7_prox •Col-0_lf7_distal •Col-0_whole21d •Col-0_whole22d •Col-0_whole23d •Col-0_senescent •Col-0_cauline •Col-0_stem_2nd •Col-0_stem_1st •Col-0_inflo •Col-0_flow9 •Col-0_flow10/11 •Col-0_flow12 •Col-0_flow12_sepal •Col-0_flow12_petal •Col-0_flow12_stam •Col-0_flow12_carp •Col-0_flow15 •Col-0_flow15_pedi •Col-0_flow15_sepal •Col-0_flow15_petal •Col-0_flow15_stam •Col-0_flow15_carp •Col-0_pollen •Col-0_sil3 •Col-0_sil4 •Col-0_sil5 •Col-0_seed6 •Col-0_seed7 •Col-0_seed8 •Col-0_seed9 •Col-0_seed10 •Col-0_roset7 •Col-0_roset14 •Col-0_roset21 •Col-0_leaf •Col-0_flower •Col-0_root_MS1 •Col-0_root_GM-8 •Col-0_root_GM5-8 •Col-0_seedl_GM •Col-0_seedl_GM5 •Col-0_root_GM-21 •Col-0_root_GM5-21 •Col-0_sedlGM-21 •Col-0_sedlGM5-21
559/574
Experiment AT23
AtGenExpress: Pseudomonas half leaf injection
Submitter:
Lishuang Shen
Head of Lab:
David B. Collinge
Experiment Factors:
pathogen isolates; time
GeneChip Type:
ATH1-121501
Experiment design (12 hybridizations)genotype •Wild-type Arabidopsis, ecotype Col-0 •ataf1-1 mutant, ecotype Col-0 treated or untreated •Un-inoculated •Bgh inoculated
566/574
Experiment AT14
Genes affected by hog1 alleviation of CHS silencing
Submitter:
Lishuang Shen
Head of Lab:
Dr Ian Furner
Experiment Factors:
genotype
GeneChip Type:
ATH1-121501
Experiment design (8 hybridizations)genotype •CHS-silenced type (ECG) •anthocyanin-producing revertants (15B)
567/574
Experiment AT13
Impact of Type III effectors on plant defense responses
Submitter:
PLEXdb Curator
Head of Lab:
Dr Murray Grant
Experiment Factors:
compound, time
GeneChip Type:
ATH1-121501
Experiment design (27 hybridizations)compound •Mock •DC3000 •DC3000hrpA •DC3000::avrRpm1 time •2hr •4hr •12hr
570/574
Experiment AT10
Arabidopsis thaliana gene expression after 6 days in shoot induction medium
Submitter:
Rhonda DeCook
Head of Lab:
Dan
Experiment Factors:
genetic line
GeneChip Type:
ATH1-121501
Experiment design (30 hybridizations)genetic line •line 4 •line 5 •line 13 •line 33 •line 35 •line 37 •line 115 •line 190 •line 191 •line 194 •line 217 •line 231 •line 232 •line 238 •line 242 •line 245 •line 263 •line 267 •line 283 •line 284 •line 288 •line 295 •line 302 •line 303 •line 332 •line 356 •line358 •line 367 •line 370 •line 377
AG
ATH1-121501
574/574
Experiment AT4
Arabidopsis thaliana gene expression during floral transition and early flower development
Submitter:
Lishuang Shen
Head of Lab:
Coordinator: Prof Lutz Nover
Experiment Factors:
developmental stage, genotype, organism part
GeneChip Type:
ATH1-121501
Experiment design (40 hybridizations)genotype •Col-0 wildtype with an AG::GUS reporter •Ler with an AG::GUS reporter •co (CS175) •ft (CS184) •lfy-12 organism part •apical region developmental stage •0 day LD •3 day LD •5 day LD •7 day LD