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Experiment Search Results


maize18k
1/574 Experiment ZM58 Expression data from Maize leaves post inoculation of Sporisorium reilianum.
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line, time
GeneChip Type: maize18k
Experiment design (20 hybridizations)
genetic line
•L282 •L43 •Huangzao4 •Q319
time
•O days •1 days •2 days •4 days •7 days

2/574 Experiment ZM57 affy_zeawall_ril2_maize: ZeaWall Project, defavorable parent F271
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: developmental stage name
GeneChip Type: maize18k
Experiment design (4 hybridizations)
developmental stage name
•emerging tassel •early silking

3/574 Experiment ZM55 affy_zeawall_ril_maize - Expression studies in 5 early maize RIL with contracted allelic patterns at major QTL posititions
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: developmental stage name, genetic line
GeneChip Type: maize18k
Experiment design (20 hybridizations)
genetic line
•RIL 99 •RIL 54 •RIL 39 •RIL 71 •RIL 118
developmental stage name
•emerging tassel •early silking

nimbMaize
4/574 Experiment ZM54 Transcriptomic analysis of induced senescence in maize
Submitter: Rajan Sekhon
Head of Lab: Shawn Kaeppler
Experiment Factors: developmental stage name, tissue type name, treatment
GeneChip Type: nimbMaize
Experiment design (48 hybridizations)
tissue type name
•Leaf •Internode
treatment
•Pollinated •Non-Pollinated
developmental stage name
•0 DAA •6 DAA •12 DAA •18 DAA •24 DAA •30 DAA

maize18k
5/574 Experiment ZM53 Expression data from LCM-captured Zea mays root cells after challenge with Meloidogyne incognita
Submitter: PLEXdb Curator
Head of Lab: Christopher Taylor
Experiment Factors: nematode infestation, time
GeneChip Type: maize18k
Experiment design (12 hybridizations)
nematode infestation
•control root cell •infested giant cell
time
•14 dai •21 dai

6/574 Experiment ZM51 Expression data from Arabidopsis and Maize leaves(Maize only at PLEXdb)
Submitter: PLEXdb Curator
Head of Lab: Ian Bancroft
Experiment Factors: genotype
GeneChip Type: maize18k
Experiment design (6 hybridizations)
genotype
•Maize B73 •Maize B97

Maize100WT_maize
7/574 Experiment ZM50 Gene expression change caused by copy number variations
Submitter: Thomas Peterson
Head of Lab: Thomas Peterson
Experiment Factors: genotype
GeneChip Type: Maize100WT_maize
Experiment design (9 hybridizations)
genotype
•p1-ww714/p1-ww714 •p1-ww714/B73 •B73/B73

maize18k
8/574 Experiment ZM49 Sporisorium reilianum Infection Changes Inflorescence and Branching Architectures of Maize
Submitter: PLEXdb Curator
Head of Lab: Jan Schirawski
Experiment Factors: pathogen inoculation
GeneChip Type: maize18k
Experiment design (6 hybridizations)
pathogen inoculation
•infected •mock

9/574 Experiment ZM48 Expression profile of maize´s stalk challenged with the corn borer Sesamia nonagrioides
Submitter: PLEXdb Curator
Head of Lab: Victor Rodriguez
Experiment Factors: genotype, insect infestation
GeneChip Type: maize18k
Experiment design (8 hybridizations)
genotype
•CM151 •EP39 •EP42 •PB130
insect infestation
•control •infested

10/574 Experiment ZM47 Maize gene expression during infection with Ustilago maydis strains SG200Dpit1 and SG200Dpit2
Submitter: PLEXdb Curator
Head of Lab: Gunther Doehlemann
Experiment Factors: pathogen strains
GeneChip Type: maize18k
Experiment design (6 hybridizations)
pathogen strains
•SG200Dpit1 •SG200Dpit2

11/574 Experiment ZM46 affy_diversity_maize-Understanding the Diversity of Maize Cell Wall
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: growth condition
GeneChip Type: maize18k
Experiment design (4 hybridizations)
growth condition
•F98902 •cm484

12/574 Experiment ZM45 Maize gene expression during infection with Colletotrichum graminicola
Submitter: PLEXdb Curator
Head of Lab: Lars Matthias Voll
Experiment Factors: pathogen inoculation, time
GeneChip Type: maize18k
Experiment design (12 hybridizations)
pathogen inoculation
•inoculated •mock
time
•36hpi •96hpi

13/574 Experiment ZM43 Responses of Zea mays root tissue to inoculation with the necrotrophic root pathogen Phytophthora cinnamomi
Submitter: PLEXdb Curator
Head of Lab: Jane Allardyce
Experiment Factors: pathogen inoculation, time
GeneChip Type: maize18k
Experiment design (12 hybridizations)
time
•6 hrs •24 hrs
pathogen inoculation
•control •inoculated

14/574 Experiment ZM42 affy_ams_maize-Cell wall maize mutant during arbuscular mycorrhizal symbiosis
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: maize18k
Experiment design (8 hybridizations)
genotype
•F2(WT) •bm4(mut)
pathogen inoculation
•control(tem) •mycorrhiza(myc)

15/574 Experiment ZM41 affy_en_maize-Understanding the Diversity of Maize Cell Wall (CM489 vs. F98902)
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genotype
GeneChip Type: maize18k
Experiment design (4 hybridizations)
genotype
•CM489 •F98902

16/574 Experiment ZM40 affy_tj_maize-Understanding the Diversity of Maize Cell Wall (CM484 vs. F98902)
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genotype
GeneChip Type: maize18k
Experiment design (4 hybridizations)
genotype
•CM484 •F98902

17/574 Experiment ZM38 Maize gene expression during infection with Ustilago maydis strain SG200∆fox1
Submitter: PLEXdb Curator
Head of Lab: Jorg Thomas Kamper
Experiment Factors: pathogen infection
GeneChip Type: maize18k
Experiment design (9 hybridizations)
pathogen infection
•mock •SG200 •SG200dfox1

nimbMaizeV2
18/574 Experiment ZM37 Genome-wide gene expression atlas of maize inbred line B73 (clone of ZM29 for nimbMaizeV2)
Submitter: PLEXdb Curator
Head of Lab: Shawn Kaeppler
Experiment Factors: organism part name
GeneChip Type: nimbMaizeV2
Experiment design (180 hybridizations)
organism part name
•24H_Germinating Seed •6DAS_GH_Coleoptile •6DAS_GH_Primary Root •V1_GH_Primary Root •VE_Whole Seedling •VE_Primary Root •V1_Pooled Leaves •V1_Stem and SAM •V4_Stem and SAM •V3_Stem and SAM •V3_First Leaf and Sheath •V3_Topmost Leaf •V5_Shoot Tip •V5_First Internode •V5_Tip of stage-2 Leaf •V5_Base of stage-2 Leaf •V7_First Internode •V7_Tip of stage-2 Leaf •V7_Base of stage-2 Leaf •V9_Fourth Internode •V9_Eighth Leaf •V9_Eleventh Leaf •V9_Thirteenth Leaf •V9_Immature Leaves •V13_Immature Tassel •V18_Meiotic Tassel •V18_Immature Cob •VT_Thirteenth Leaf •R1_Pre-pollination Cob •R1_Silks •R1_Anthers •R1_Innermost Husk •R2_Thirteenth Leaf •R2_Outer Husk •R2_Innermost Husk •2DAP_Whole Seed •4DAP_Whole Seed •6DAP_Whole Seed •8DAP_Whole Seed •10DAP_Whole Seed •12DAP_Whole Seed •12DAP_Endosperm •14DAP_Whole Seed •14DAP_Endosperm •16DAP_Whole Seed •16DAP_Endosperm •16DAP_Embryo •18DAP_Whole Seed •18DAP_Endosperm •18DAP_Embryo •18DAP_Pericarp •20DAP_Whole Seed •20DAP_Endosperm •20DAP_Embryo •22DAP_Whole Seed •22DAP_Endosperm •22DAP_Embryo •24DAP_Whole Seed •24DAP_Endosperm •24DAP_Embryo

maize18k
19/574 Experiment ZM36 Understanding the Diversity of Maize Cell Wall (affy_cellwall_maize)
Submitter: PLEXdb Curator
Head of Lab: Magalie Pichon
Experiment Factors: genetic line
GeneChip Type: maize18k
Experiment design (10 hybridizations)
genetic line
•F7025(ge1bl) •F7033(ge2bl) •F98902(ge3bl) •F2(ge4bl) •Cm484(ge5bl)

20/574 Experiment ZM35 Expression profile of contrasting maize genotypes grown in acid and control soil (leaves)
Submitter: PLEXdb Curator
Head of Lab: Marcelo Menossi
Experiment Factors: genetic line, growth condition
GeneChip Type: maize18k
Experiment design (12 hybridizations)
genetic line
•Cat100-6(Al-tolerant) •S1587-17(Al-sensitive)
growth condition
•control soil •acid soil

21/574 Experiment ZM34 Expression data from maize endosperm
Submitter: PLEXdb Curator
Head of Lab: Xiang Li
Experiment Factors: genotype
GeneChip Type: maize18k
Experiment design (9 hybridizations)
genotype
•wild type(B73) •ae wx •sh1

22/574 Experiment ZM33 Expression profile of contrasting maize genotypes grown on acid and control soil (root tips)
Submitter: PLEXdb Curator
Head of Lab: Marcelo Menossi
Experiment Factors: genetic line, growth condition, time
GeneChip Type: maize18k
Experiment design (24 hybridizations)
genetic line
•Cat100-6(Al-tolerant) •S1587-17(Al-sensitive)
growth condition
•control soil •acid soil
time
•1 days •3 days

23/574 Experiment ZM32 Maize gene expression during infection with Fusarium moniliforme
Submitter: PLEXdb Curator
Head of Lab: Guangtang Pan
Experiment Factors: genetic line, pathogen inoculation
GeneChip Type: maize18k
Experiment design (8 hybridizations)
genetic line
•BT-1(Resistant) •Ye478(Suscpetible)
pathogen inoculation
•Control •Fusarium moniliform

24/574 Experiment ZM31 Profiling expression changes caused by a segmental aneuploid in maize meristem tissues
Submitter: PLEXdb Curator
Head of Lab: Irina Makarevitch
Experiment Factors: genotype
GeneChip Type: maize18k
Experiment design (6 hybridizations)
genotype
•DpDf(siblings) •wildtype(siblings)

25/574 Experiment ZM30 Genome-wide transcriptome analysis of two maize inbred lines under drought stress during the seedling stage
Submitter: PLEXdb Curator
Head of Lab: Guoying Wang
Experiment Factors: genetic line, stress condition
GeneChip Type: maize18k
Experiment design (24 hybridizations)
genetic line
•Han21(drought-tolerant) •Ye478(drought-sensitive)
stress condition
•control •moderate drought •severe drought •re-watering

nimbMaize
26/574 Experiment ZM29 Genome-wide gene expression atlas of maize inbred line B73
Submitter: PLEXdb Curator
Head of Lab: Shawn Kaeppler
Experiment Factors: organism part name
GeneChip Type: nimbMaize
Experiment design (180 hybridizations)
organism part name
•24H_Germinating Seed •6DAS_GH_Coleoptile •6DAS_GH_Primary Root •V1_GH_Primary Root •VE_Whole Seedling •VE_Primary Root •V1_Pooled Leaves •V1_Stem and SAM •V4_Stem and SAM •V3_Stem and SAM •V3_First Leaf and Sheath •V3_Topmost Leaf •V5_Shoot Tip •V5_First Internode •V5_Tip of stage-2 Leaf •V5_Base of stage-2 Leaf •V7_First Internode •V7_Tip of stage-2 Leaf •V7_Base of stage-2 Leaf •V9_Fourth Internode •V9_Eighth Leaf •V9_Eleventh Leaf •V9_Thirteenth Leaf •V9_Immature Leaves •V13_Immature Tassel •V18_Meiotic Tassel •V18_Immature Cob •VT_Thirteenth Leaf •R1_Pre-pollination Cob •R1_Silks •R1_Anthers •R1_Innermost Husk •R2_Thirteenth Leaf •R2_Outer Husk •R2_Innermost Husk •2DAP_Whole Seed •4DAP_Whole Seed •6DAP_Whole Seed •8DAP_Whole Seed •10DAP_Whole Seed •12DAP_Whole Seed •12DAP_Endosperm •14DAP_Whole Seed •14DAP_Endosperm •16DAP_Whole Seed •16DAP_Endosperm •16DAP_Embryo •18DAP_Whole Seed •18DAP_Endosperm •18DAP_Embryo •18DAP_Pericarp •20DAP_Whole Seed •20DAP_Endosperm •20DAP_Embryo •22DAP_Whole Seed •22DAP_Endosperm •22DAP_Embryo •24DAP_Whole Seed •24DAP_Endosperm •24DAP_Embryo

maize18k
27/574 Experiment ZM28 Circadian clock-mediated transcriptional regulation in maize
Submitter: Frank G Harmon
Head of Lab: Frank G. Harmon
Experiment Factors: Continuous Light
GeneChip Type: maize18k
Experiment design (12 hybridizations)
Continuous Light
•ZT0 •ZT4 •ZT8 •ZT12 •ZT16 •ZT20 •ZT24 •ZT28 •ZT32 •ZT36 •ZT40 •ZT44

28/574 Experiment ZM26 Expression profiling of zmet2-m1 mutants relative to wild-type
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line, genotype
GeneChip Type: maize18k
Experiment design (18 hybridizations)
genetic line
•B73 •Mo17
genotype
•wildtype •zmet2-m1

29/574 Experiment ZM25 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound
GeneChip Type: maize18k
Experiment design (6 hybridizations)
compound
•control •IAA •TIBA

30/574 Experiment ZM24 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen infection
GeneChip Type: maize18k
Experiment design (6 hybridizations)
pathogen infection
•mock •infected

31/574 Experiment ZM23 Profiling expression changes caused by a segmental aneuploid in maize
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: maize18k
Experiment design (8 hybridizations)
genetic line
•wildtype •aneuploid(DpDf)

32/574 Experiment ZM22 Gene expression variation among eight maize inbreds
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: maize18k
Experiment design (24 hybridizations)
genetic line
•B37 •B73 •B84 •Mo17 •Oh43 •B14a •W22 •Wf9

33/574 Experiment ZM21 Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: maize18k
Experiment design (27 hybridizations)
genetic line
•B37 •B73 •B84 •Mo17 •Oh43 •B37xB73 •B84xB73 •Oh43xB73 •Oh43xMo17

34/574 Experiment ZM20 Maize gene expression during infection with Ustilago maydis
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen infection, time
GeneChip Type: maize18k
Experiment design (36 hybridizations)
pathogen infection
•mock •infected
time
•0.5 dpi •1 dpi •2 dpi •4 dpi •4.5 dpi •8 dpi

35/574 Experiment ZM19 Transcriptional and translational gene regulation in the maize pulvinus
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: gravity stimulation, pulvinus segment, RNA type
GeneChip Type: maize18k
Experiment design (48 hybridizations)
gravity stimulation
•control •2 min •5 min •15 min •30 min •60 min
pulvinus segment
•upper •lower
RNA type
•total •polyribosme-associated

36/574 Experiment ZM18 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP and 19DAP
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name, genetic line
GeneChip Type: maize18k
Experiment design (24 hybridizations)
developmental stage name
•13_DAP_endosperm •19_DAP_endosperm
genetic line
•Mo17 •B73 •Mo17xB73 •B73xMo17

37/574 Experiment ZM17 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: maize18k
Experiment design (12 hybridizations)
genetic line
•Mo17 •B73 •Mo17xB73 •B73xMo17

38/574 Experiment ZM16 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: maize18k
Experiment design (12 hybridizations)
genetic line
•Mo17 •B73 •Mo17xB73 •B73xMo17

39/574 Experiment ZM15 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound
GeneChip Type: maize18k
Experiment design (6 hybridizations)
compound
•control •GA3 •UCZ

40/574 Experiment ZM14 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, organism part name
GeneChip Type: maize18k
Experiment design (36 hybridizations)
organism part name
•seedling •immature ear •embryo
genotype
•Mo17 •B73 •Mo17xB73 •B73xMo17

41/574 Experiment ZM13 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: maize18k
Experiment design (12 hybridizations)
genotype
•Mo17 •B73 •Mo17xB73 •B73xMo17

42/574 Experiment ZM12 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: maize18k
Experiment design (12 hybridizations)
genotype
•Mo17 •B73 •Mo17xB73 •B73xMo17

43/574 Experiment ZM11 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: maize18k
Experiment design (4 hybridizations)
genotype
•Wildtype •Mutant

44/574 Experiment ZM10 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
Submitter: Michael Allen Gore
Head of Lab: Dr. Edward S. Buckler
Experiment Factors: genotype, protocol
GeneChip Type: maize18k
Experiment design (36 hybridizations)
protocol
•mRNA •Cot filtration (CF) •Methylation filtration (MF) •Amplified fragment restriction polymorphism (AFLP)
genotype
•B73 maize inbred •Mo17 maize inbred •CML69 maize inbred

45/574 Experiment ZM4 B73-Mo17-F1 11 day seedling
Submitter: Nathan M Springer
Experiment Factors: genotype
GeneChip Type: maize18k
Experiment design (12 hybridizations)
genotype
•B73 •Mo17 •B73 x Mo17 •Mo17 x B73

GrapeGen
46/574 Experiment VV46 Effect of temperature and irradiation intensity on grapevine berry ripening in Muscat Hamburg fruiting cuttings
Submitter: Pablo Carbonell-Bejerano
Head of Lab: José M. Martínez-Zapater
Experiment Factors: light, temperature
GeneChip Type: GrapeGen
Experiment design (12 hybridizations)
temperature
•30/25 C •20/15 C
light
•400 μmol·m−2·s−1 •200 μmol·m−2·s−1

47/574 Experiment VV45 Transcript and metabolite analysis in Trincadeira cultivar reveals novel information regarding the dynamics of grape ripening
Submitter: PLEXdb Curator
Head of Lab: Ana Margarida Fortes
Experiment Factors: developmental stage name, year
GeneChip Type: GrapeGen
Experiment design (21 hybridizations)
developmental stage name
•EL32 •EL34 •EL35 •EL36
year
•2007 •2008

48/574 Experiment VV44 Grapevine cell cultures transcriptomic response to methyl jasmonate and cyclodextrin elicitors
Submitter: Pablo Carbonell-Bejerano
Head of Lab: Diego Lijavetzky
Experiment Factors: time, treatment
GeneChip Type: GrapeGen
Experiment design (24 hybridizations)
treatment
•Control •MJ •CD •MJ+CD
time
•0 hrs •24 hrs

49/574 Experiment VV43 Gene expression in leaves of grapevine plants under abiotic stress conditions: heat and water
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: stress condition
GeneChip Type: GrapeGen
Experiment design (6 hybridizations)
stress condition
•control •water •heat

50/574 Experiment VV42 Berry skin development in Norton grape: Distinct patterns of transcriptional regulation and flavonoid biosynthesis
Submitter: PLEXdb Curator
Head of Lab: Wenping Qiu
Experiment Factors: Berry Skin Stage
GeneChip Type: GrapeGen
Experiment design (18 hybridizations)
Berry Skin Stage
•33 •34 •35 •36 •37 •38

Grape
51/574 Experiment VV41 Rootstock and soil effects on grape transcriptome
Submitter: alessio aprile
Head of Lab: Luigi Cattivelli
Experiment Factors: treatment1, treatment2
GeneChip Type: Grape
Experiment design (18 hybridizations)
treatment1
•Turf •Sand •Asti soil
treatment2
•101-14 rootstock •1103-P rootstock

52/574 Experiment VV40 Transcriptomic analysis during heat stress and after the following recovery in grapevine (Vitis vinifera L.) leaves
Submitter: Lijun Wang
Head of Lab: Shaohua Li
Experiment Factors: temperature
GeneChip Type: Grape
Experiment design (12 hybridizations)
temperature
•45 C •25 C •45-25 C •25-25 C

GrapeGen
53/574 Experiment VV36 Time course of grapevine bud development
Submitter: José Diaz-Riquelme
Head of Lab: Jose.M. Martinez-Zapater
Experiment Factors: time
GeneChip Type: GrapeGen
Experiment design (24 hybridizations)
time
•MAY •JUNE •JULY •SEPTEMBER •NOVEMBER •JANUARY •MARCH •APRIL

54/574 Experiment VV33 Grape flesh and skin ripening transcriptomic profiling
Submitter: Pablo Carbonell-Bejerano
Head of Lab: José M. Martínez-Zapater
Experiment Factors: developmental stage name, tissue type name
GeneChip Type: GrapeGen
Experiment design (60 hybridizations)
tissue type name
•Flesh •Skin
developmental stage name
•P •V1 •V2 •R1 •R2

Grape
55/574 Experiment VV31 Expression data from 35S::VvCBF4-overexpressing grapevines
Submitter: PLEXdb Curator
Head of Lab: John C. Cushman
Experiment Factors: genetic line
GeneChip Type: Grape
Experiment design (8 hybridizations)
genetic line
•VvCBF4 overexpressor •control

nimbGrape
56/574 Experiment VV30 The effects of ABA and ABF2 overexpression in cell culture
Submitter: Grant R Cramer
Head of Lab: Serge Delrot
Experiment Factors: cell line, growth_regulator
GeneChip Type: nimbGrape
Experiment design (12 hybridizations)
cell line
•pFB8 •35SABF2
growth_regulator
•0 µM ABA •20 µM ABA

Grape
57/574 Experiment VV29 Expression data from micropropagated Vitis vinifera when transferred to ex vitro conditions
Submitter: PLEXdb Curator
Head of Lab: Sara Amâncio
Experiment Factors: time
GeneChip Type: Grape
Experiment design (4 hybridizations)
time
•0 hrs •48 hrs

58/574 Experiment VV28 Gene expression associated with compatible viral diseases in berry
Submitter: Andrea Vega
Head of Lab: Patricio Arce-Johnson
Experiment Factors: developmental stage name, pathogen infection
GeneChip Type: Grape
Experiment design (14 hybridizations)
pathogen infection
•GLRaV-3 virus-infected •Virus-free
developmental stage name
•Veraison •Ripening

59/574 Experiment VV19 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: Grape
Experiment design (12 hybridizations)
genotype
•Rpv1(+)Rpv2(-)_B •Rpv1(-)Rpv1(+)_C •Rpv1(-)Rpv1(-)_D
pathogen inoculation
•Non-Inoculated •Inoculated

60/574 Experiment VV18 Grape_Bud_Dormancy
Submitter: Anne Y Fennell
Head of Lab: Anne Fennell
Experiment Factors: genotype, photoperiod, time, year
GeneChip Type: Grape
Experiment design (167 hybridizations)
genotype
•Seyval (SV, Seyve Villard 5-276) •V. riparia (VR, PI588259)
year
•1 •2
photoperiod
•15 h •13 h
time
•1 days •3 days •7 days •14 days •21 days •28 days •42 days

61/574 Experiment VV17 Grape skin transcriptome in the berries cultured in vitro treated with exogenous abscisic acid.
Submitter: kazuya koyama
Head of Lab: -
Experiment Factors: time, treated or untreated
GeneChip Type: Grape
Experiment design (8 hybridizations)
treated or untreated
•ABA treated •Non-treated (control)
time
•3 days •10 days

62/574 Experiment VV16 Grape skin transcriptome in the berries grown on the vine treated with exogenous abscisic acid
Submitter: kazuya koyama
Head of Lab: -
Experiment Factors: developmental stage name, treated or untreated
GeneChip Type: Grape
Experiment design (12 hybridizations)
treated or untreated
•ABA treated •untreated (control)
developmental stage name
•14 days after veraison •28 days after veraison

63/574 Experiment VV15 Expression data in individual grape berries during ripening initation
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: berry position, developmental stage name, plant
GeneChip Type: Grape
Experiment design (32 hybridizations)
developmental stage name
•green hard •green soft •pink soft •red soft
berry position
•distal •proximal
plant
•1 •2

64/574 Experiment VV14 Gene expression in grapevine in response to Bois noir infection
Submitter: albertazzi giorgia
Head of Lab: Nicola Pecchioni
Experiment Factors: disease type, genotype
GeneChip Type: Grape
Experiment design (10 hybridizations)
genotype
•Chardonnay •Incrocio Manzoni
disease type
•Bois Noir infected •Healthy

65/574 Experiment VV13 Powdery Mildew-Induced Transcriptome in a Resistant Grapevine ‘Norton’
Submitter: Susanne Howard
Head of Lab: Wenping Qiu, Laszlo Kovacs
Experiment Factors: time, treated or untreated
GeneChip Type: Grape
Experiment design (36 hybridizations)
treated or untreated
•PM-inoculated •mock-inoculated
time
•0 hai •4 hai •8 hai •12 hai •24 hai •48 hai

66/574 Experiment VV12 Powdery Mildew-Induced Transcriptome in a Susceptible Grapevine ‘Cabernet Sauvignon’
Submitter: Susanne Howard
Head of Lab: Wenping Qiu, Laszlo Kovacs
Experiment Factors: time, treated or untreated
GeneChip Type: Grape
Experiment design (36 hybridizations)
treated or untreated
•PM-inoculated •mock-inoculated
time
•0 hai •4 hai •8 hai •12 hai •24 hai •48 hai

67/574 Experiment VV11 Pinot Noir berry transcriptome during ripening.
Submitter: Stefania Pilati
Head of Lab: Claudio Moser
Experiment Factors: developmental stage, year
GeneChip Type: Grape
Experiment design (27 hybridizations)
year
•2003 •2005 •2006
developmental stage
•UD:0000034 33E-L, •UD:0000035 34E-L, •UD:0000037 36E-L,

68/574 Experiment VV10 Photoperiod regulation of grape bud dormancy
Submitter: Anne Y Fennell
Head of Lab: Fennell
Experiment Factors: genotype, other, time
GeneChip Type: Grape
Experiment design (84 hybridizations)
genotype
•Seyval (SV, Seyve Villard 5-276) •V. riparia (VR, PI588259)
other
•Long photoperiod (LD, 15h) •Short photoperiod (SD, 13h)
time
•1 days •3 days •7 days •14 days •21 days •28 days •42 days

69/574 Experiment VV9 High temperature effect on Cabernet Sauvignon berries
Submitter: Kentaro Mori
Experiment Factors: developmental stage, temperature
GeneChip Type: Grape
Experiment design (12 hybridizations)
developmental stage
•2 weeks •4 weeks •6 weeks
temperature
•High temperature •Control

70/574 Experiment VV7 Gene expression associated with compatible viral diseases in grapevine cultivars
Submitter: Andrea Vega
Head of Lab: Patricio Arce
Experiment Factors: biotic stress
GeneChip Type: Grape
Experiment design (6 hybridizations)
biotic stress
•virus infection •control

71/574 Experiment VV5 Chardonnay and Cabernet-Sauvignon's berry development
Submitter: Laurent G Deluc
Experiment Factors: cultivar, developmental stage, Treated or untreated
GeneChip Type: Grape
Experiment design (84 hybridizations)
developmental stage
•31 •32 •33 •34 •35 •36 •38
Treated or untreated
•WW •WD
cultivar
•Cab •Chard

72/574 Experiment VV3 Grape berry tissues differentiation
Submitter: Jerome Grimplet
Experiment Factors: tissue type, Treated or untreated
GeneChip Type: Grape
Experiment design (18 hybridizations)
tissue type
•Pulp •Skin •Seed
Treated or untreated
•Well watered •Water deficit

73/574 Experiment VV2 Long-term Salt & Water Stress in Grapes
Submitter: Grant R Cramer
Head of Lab: Cramer
Experiment Factors: stress, time
GeneChip Type: Grape
Experiment design (39 hybridizations)
time
•Day 0 •Day 4 •Day 8 •Day 12 •Day 16
stress
•Control •Water-Deficit •Salinity

74/574 Experiment VV1 short term abiotic stress Cabernet Sauvignon
Submitter: Elizabeth A R Tattersall
Head of Lab: Grant Cramer
Experiment Factors: time, treatment
GeneChip Type: Grape
Experiment design (48 hybridizations)
time
•0 h •1 h •4 h •8 h •24 h
treatment
•unstressed •salt •PEG •cold (5 C)

Wheat
75/574 Experiment TA49 Alteration in transcript level in wheat alloplasmic lines
Submitter: cristina crosatti
Head of Lab: Luigi Cattivelli
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (15 hybridizations)
genotype
•EU_T20 •ALLO_TH237 •EU_CHRIS •ALLO_183 •ALLO_195

76/574 Experiment TA48 Pale-green durum wheat mutant under terminal drought stress condition
Submitter: alessio aprile
Head of Lab: Luigi De Bellis
Experiment Factors: drought, genotype
GeneChip Type: Wheat
Experiment design (12 hybridizations)
genotype
•WT •M
drought
•CTRL •Drought

77/574 Experiment TA47 Drought, heat and combined stress in durum wheat
Submitter: alessio aprile
Head of Lab: Luigi De Bellis
Experiment Factors: genotype, treatment
GeneChip Type: Wheat
Experiment design (24 hybridizations)
treatment
•CTRL •Drought •Heat •Mixed
genotype
•Ofanto •Cappelli

78/574 Experiment TA46 Lr1-mediated leaf rust resistance pathways of transgenic wheat lines
Submitter: PLEXdb Curator
Head of Lab: Sylvie Cloutier
Experiment Factors: time
GeneChip Type: Wheat
Experiment design (18 hybridizations)
time
•0 hrs •6 hrs •24 hrs

79/574 Experiment TA45 Global transgenerational gene expression dynamics in two nascent allohexaploid wheat lines analogous in genome constitution to common wheat (Triticum aestivum)
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: Wheat
Experiment design (18 hybridizations)
genetic line
•AT5 selfed generation 4 •AT5 selfed generation 5 •AT9 selfed generation 4 •AT9 selfed generation 5 •MPV5 •MPV9 •Parental TQ27 •Parental TTH01 •Parental TTR04

80/574 Experiment TA44 Transcriptome profiling of reproductive stage flag leaves of wheat from drought susceptible parent WL711, drought tolerant parent C306 and drought susceptible and drought tolerant RIL bulks in irrigated and drought condition
Submitter: PLEXdb Curator
Head of Lab: NK Singh
Experiment Factors: cultivar, stress condition
GeneChip Type: Wheat
Experiment design (24 hybridizations)
cultivar
•WL711 susceptible •RIL susceptible •C306 tolerant •RIL tolerant
stress condition
•irrigated •drought

81/574 Experiment TA43 Expression data from Triticum aestivum L. roots
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, treatment
GeneChip Type: Wheat
Experiment design (4 hybridizations)
genotype
•Luohan •Chinese Spring
treatment
•control •PEG

82/574 Experiment TA42 Transcriptome profiling and expression analyses of genes critical to wheat adaptation to low temperature
Submitter: PLEXdb Curator
Head of Lab: Debbie Laudencia-Chingcuanco
Experiment Factors: genotype, time
GeneChip Type: Wheat
Experiment design (96 hybridizations)
genotype
•Winter Manitou (12W) •Spring Northstar (8S) •Spring Manitou (Ma) •Winter Northstar (No)
time
•0 days •2 days •14 days •21 days •35 days •42 days •56 days •70 days

83/574 Experiment TA41 Response to Fusarium in near-isogenic lines harboring resistance QTLs Fhb1 and Qfhs.ifa-5A
Submitter: Wolfgang Schweiger
Head of Lab: Hermann Buerstmayr
Experiment Factors: genotype, time, treatment
GeneChip Type: Wheat
Experiment design (90 hybridizations)
genotype
•NIL1 (resistant, Fhb1, Qfhs.ifa-5A) •NIL2 (moderately resistant, Fhb1) •NIL3 (moderately resistant, Qfhs.ifa-5A) •NIL4 (susceptible) •CM82036 (resistant)
treatment
•Fusarium graminearum strain IFA-65 •water
time
•8 hai •24 hai •72 hai

84/574 Experiment TA40 Differential transcriptome analyses of three wheat genotypes in their response to Fusarium Head Blight and trichothecenes
Submitter: PLEXdb Curator
Head of Lab: Brian Ellis
Experiment Factors: genotype, pathogen inoculation, time
GeneChip Type: Wheat
Experiment design (144 hybridizations)
genotype
•Superb •GS-1-EM0040 •GS-1-EM0168
pathogen inoculation
•uninoculated control •water •FgTri5+ •FgTri5- •FgTri5-/DON •DON
time
•0 hrs •3 hrs •8 hrs •24 hrs

85/574 Experiment TA39 Expression data in wheat (T. aestivum L.) near isogenic lines in response to powdery mildew infection
Submitter: PLEXdb Curator
Head of Lab: Qixin Sun
Experiment Factors: genotype, time
GeneChip Type: Wheat
Experiment design (12 hybridizations)
genotype
•susceptible(8866) •resistant(pm30)
time
•0 hrs •12 hrs

86/574 Experiment TA38 affy_seed_kinetic_wheat-Transcriptomic wheat seed
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: time
GeneChip Type: Wheat
Experiment design (10 hybridizations)
time
•B-100 degree days •C-200 degree days •D-250 degree days •E-300-degree days •G-500 degree days

87/574 Experiment TA37 Metabolism-based resistance to herbicides in black-grass
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (6 hybridizations)
genotype
•Sensitive •Moderately resistant •Resistant

88/574 Experiment TA36 Pleiotropic expression of endogenous genes upon fungus infection of wheat plants containing anti-fungal transgenes
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, pathogen isolates
GeneChip Type: Wheat
Experiment design (18 hybridizations)
genotype
•Gro •GrKP4
pathogen isolates
•T. caries (T1) •T. caries (T16) •Control

89/574 Experiment TA35 RNA profiling of Fusarium head blight-resistant wheat addition lines containing the Thinopyrum elongatum chromosome 7E
Submitter: PLEXdb Curator
Head of Lab: Therese Ouellet
Experiment Factors: genotype, pathogen inoculation, time
GeneChip Type: Wheat
Experiment design (18 hybridizations)
genotype
•CS •CS-7E •CS-7EL
pathogen inoculation
•FG •Control
time
•2 dpi •4 dpi

90/574 Experiment TA34 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound, pathogen inoculation
GeneChip Type: Wheat
Experiment design (12 hybridizations)
compound
•No_Si •Si
pathogen inoculation
•No_Bgt •Bgt

91/574 Experiment TA33 Wild emmer wheat comparison of drought resistant vs. susceptible genotypes under terminal drought
Submitter: Tamar Krugman
Head of Lab: Fahima Tzion
Experiment Factors: genotype, treated or untreated
GeneChip Type: Wheat
Experiment design (12 hybridizations)
genotype
•Drought resistant (R) Y12-3 •Drought susceptible (S) A24-39
treated or untreated
•Well-watered •terminal drought

92/574 Experiment TA32 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, inoculation, time
GeneChip Type: Wheat
Experiment design (36 hybridizations)
genotype
•Tc •Tc-Lr1 •Tc-Lr34
time
•3 dpi •7 dpi
inoculation
•mock •P. triticina

93/574 Experiment TA31 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen infection
GeneChip Type: Wheat
Experiment design (6 hybridizations)
pathogen infection
•mock inoculated •Fp inoculated

94/574 Experiment TA30 Genotypic differences in water soluble carbohydrate metabolism in stem
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (16 hybridizations)
genotype
•SB165 •SB169 •SB10 •SB62 •SB109 •SB69 •SB57 •SB3

95/574 Experiment TA29 Expression data from rust or mock inoculated, fully expanded flag leaf halves
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, organism part name, treatment
GeneChip Type: Wheat
Experiment design (36 hybridizations)
genotype
•Jupateco_Lr34 (resistant) •Jupateco_Lr34(susceptible) •Thatcher_Lr34(resistant) •Thatcher_L34(susceptible)
organism part name
•basal leaf •distal leaf
treatment
•mock_inoculated •rust_inoculated

96/574 Experiment TA28 Wheat expression level polymorphism study parentals and progenies from SB location
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (76 hybridizations)
genotype
•AC Domain •RL4452 •G13 •F29 •H10 •G32 •H5 •DH91 •F36 •A91 •E5 •D15 •G30 •B68 •C31 •DH95 •A81 •A40 •A88 •A35 •A10 •C25 •F38b •F38a •D39 •B33 •J15 •F82 •C22 •F48 •F44 •H8 •B11 •H23 •B65 •C10 •A77 •H9

97/574 Experiment TA27 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name
GeneChip Type: Wheat
Experiment design (21 hybridizations)
developmental stage name
•pre-meiosis •leptotene-pachytene •diplotene-anaphaseI •telophaseI-telophaseII •tetrads •immature pollen •mature anthers

98/574 Experiment TA26 Transcriptome analysis of two Yr5 deletion mutants
Submitter: Graham Robert David McGrann
Head of Lab: Dr Lesley Boyd
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (9 hybridizations)
genotype
•Yr5_WT •Yr5_del55 •Yr5_del67

99/574 Experiment TA25 Transcription profiling of wheat interacting with incompatible and compatible yellow rust in a Yr1-containing genotype
Submitter: Graham Robert David McGrann
Head of Lab: Mahinur Akkaya
Experiment Factors: pathogen isolates
GeneChip Type: Wheat
Experiment design (9 hybridizations)
pathogen isolates
•Mock inoculated (Control) •Yr1-avirulent wheat yellow rust isolate 232E137 •Yr1-virulent wheat yellow rust isolate 169E136

100/574 Experiment TA24 Transcription profiling wheat responses to adapted and non-adapted isolates of the blast fungus, Magnaporthe
Submitter: Graham Robert David McGrann
Head of Lab: Lesley Boyd
Experiment Factors: pathogen isolates
GeneChip Type: Wheat
Experiment design (12 hybridizations)
pathogen isolates
•Mock-inoculated (Control) •Wheat non-adapted Magnaporthe isolate BR29 •Wheat adapted Magnaporthe isolate BR32 •Wheat adapted Magnaporthe isolate BR37

101/574 Experiment TA23 Drought stress in Wheat at grain filling stage
Submitter: alessio aprile
Head of Lab: Luigi Cattivelli
Experiment Factors: genotype, stress condition
GeneChip Type: Wheat
Experiment design (27 hybridizations)
genotype
•Creso •CS •CS-5AL
stress condition
•Control •Mild stress •Severe stress

102/574 Experiment TA22 Freeze Resistance basis of winter wheat mutant lines
Submitter: Fedora Sutton
Head of Lab: Fedora Sutton
Experiment Factors: genotype, temperature
GeneChip Type: Wheat
Experiment design (8 hybridizations)
genotype
•SD16029 (FR) •SD16169 (FS)
temperature
•25 C •4 C

103/574 Experiment TA20 Transcriptome analysis of a wheat NIL pair carrying FHB resistant and susceptible alleles
Submitter: Haiyan Jia
Head of Lab: Gary Muehlbauer
Experiment Factors: genotype, time, treated or untreated
GeneChip Type: Wheat
Experiment design (24 hybridizations)
genotype
•resistant •susceptible
treated or untreated
•Fusarium graminearum strain Butte 86 •water
time
•48 hai •96 hai

104/574 Experiment TA11 Wheat Yr39 and yr39 (Alpowa) genotypes treated with P.s. tritici PST-78
Submitter: Tristan E Coram
Head of Lab: Xianming Chen
Experiment Factors: genotype, time, Treated or untreated
GeneChip Type: Wheat
Experiment design (36 hybridizations)
genotype
•Yr39 •yr39
time
•12 hpi •24 hpi •48 hpi
Treated or untreated
•P. s. tritici-inoculated •Mock-inoculated

105/574 Experiment TA10 Mapping translocation breakpoints using a wheat microarray
Submitter: Prasanna R Bhat
Head of Lab: Timothy J. Close
Experiment Factors: genetic line
GeneChip Type: Wheat
Experiment design (10 hybridizations)
genetic line
•Pavon •Pavon Dt1BL •1RS.1BL •T-1 •1B+5

106/574 Experiment TA9 Wheat Yr5 isolines treated with P.s. tritici PST-100 (06-194)
Submitter: Tristan E Coram
Head of Lab: Xianming Chen
Experiment Factors: genotype, time, Treated or untreated
GeneChip Type: Wheat
Experiment design (48 hybridizations)
genotype
•Yr5 isoline •yr5 isoline
time
•06h •12h •24h •48h
Treated or untreated
•P. s. tritici-inoculated •Mock-inoculated

107/574 Experiment TA8 Expression Profile Mapping - Location 2 - mapping population
Submitter: Mark C Jordan
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (72 hybridizations)
genotype
•G13 •F29 •H10 •G32 •H5 •DH91 •F36 •A91 •E5 •D15 •G30 •B68 •C31 •DH95 •A81 •A40 •A88 •A35 •A10 •C25 •F38b •F38a •D39 •B33 •J15 •F82 •C22 •F48 •F44 •H8 •B11 •H23 •B65 •C10 •A77 •H9

108/574 Experiment TA7 Expression Profile Mapping - Location 2 - parental genotypes
Submitter: Mark C Jordan
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (4 hybridizations)
genotype
•RL4452 •AC Domain

109/574 Experiment TA6 Expression Profile Mapping - 78 chip experiment parents
Submitter: Mark C Jordan
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (4 hybridizations)
genotype
•RL4452 •AC Domain

110/574 Experiment TA5 Expression Profile Mapping - 78 chip experiment final
Submitter: Mark C Jordan
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (78 hybridizations)
genotype
•A88 •F36 •B11 •DH91 •C58 •D15 •F29 •H23 •H5 •A81 •F48 •B65 •B33 •H8 •F44 •F38b •A91 •F82 •C10 •G13 •H10 •F87 •A35 •G30 •E5 •DH95 •C31 •A40 •C22 •B68 •H9 •G32 •F38a •C25 •J15 •A77 •D39 •A10 •B10

111/574 Experiment TA3 Transcription patterns during wheat development (Mirrors BB3)
Submitter: Tim Sutton
Head of Lab: Peter Langridge
Experiment Factors: tissue type
GeneChip Type: Wheat
Experiment design (39 hybridizations)
tissue type
•germinating seed, coleoptile •germinating seed, root •germinating seed, embryo •seedling, root •seedling, crown •seedling, leaf •immature inflorescence •floral bracts, before anthesis •pistil, before anthesis •anthers, before anthesis •3-5 DAP caryopsis •22 DAP embryo •22 DAP endosperm

112/574 Experiment TA2 Wheat GeneChip Test
Submitter: Timothy J Close
Head of Lab: Timothy J. Close
Experiment Factors: dose
GeneChip Type: Wheat
Experiment design (6 hybridizations)
dose
•LowSpike •HighSpike

113/574 Experiment TA1 Rehybridization of Wheat and Barley cRNAs to the Affymetrix Wheat Genome Arrays
Submitter: Rico A. Caldo
Head of Lab: Roger P Wise
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (2 hybridizations)
genotype
•Wheat (BB1-H1/S1) •Barley (Mla1-5874-0hai)

sugarcane8k
114/574 Experiment SO1 Differential expression of genes in the leaves of sugarcane in response to sugar accumulation
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: cold-girdling
GeneChip Type: sugarcane8k
Experiment design (8 hybridizations)
cold-girdling
•control •cold-girdled

Poplar61k
115/574 Experiment PT49 Affymetrix data from Populus nectaries versus leaves
Submitter: PLEXdb Curator
Head of Lab: Peter Ache
Experiment Factors: organism part name
GeneChip Type: Poplar61k
Experiment design (6 hybridizations)
organism part name
•leaf •nectary

116/574 Experiment PT48 Transcript expression data from Populus euphratica leaves subjected to drought
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: water stress
GeneChip Type: Poplar61k
Experiment design (10 hybridizations)
water stress
•Watering 100% •Watering 70% •Watering 50% •Watering 20% •Watering 5%

117/574 Experiment PT47 Transcript expression data from Populus euphratica leaves subjected to infection by Marssonina pathogen
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: time
GeneChip Type: Poplar61k
Experiment design (6 hybridizations)
time
•0 dai •2 dai •7 dai

118/574 Experiment PT46 Transcriptome profiling data for secondary vascular tissue regeneration in Populus tomentosa
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name
GeneChip Type: Poplar61k
Experiment design (10 hybridizations)
developmental stage name
•diX •deX •rPh •diC •rC

119/574 Experiment PT45 Identification of Developing Xylem-Specific Promoters from Poplar by Using tissue type-Specific Whole Genome Transcriptome Analysis.
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: tissue type name
GeneChip Type: Poplar61k
Experiment design (16 hybridizations)
tissue type name
•Bark and Mature Phloem •Cambium •Developing Phloem •Developing Xylem •Mature Leaf •Mature Xylem •Shoot and Leaf Primordia •Whole Stem

120/574 Experiment PT44 affy_popsec_nancy_stomata_poplar -Molecular bases of acclimation and adaptation to water deficit in poplar
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genotype, water stress
GeneChip Type: Poplar61k
Experiment design (16 hybridizations)
genotype
•Carpaccio •Soligo
water stress
•control •early-drought stress •mild water deficit •moderate water deficit

121/574 Experiment PT43 Expression data from one-year-old leaves of Populus simonii treated with short-term water deficit
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: water stress
GeneChip Type: Poplar61k
Experiment design (4 hybridizations)
water stress
•water deficit •control

122/574 Experiment PT42 CO1 and CO2 network analysis in poplar
Submitter: PLEXdb Curator
Head of Lab: Cetin Yuceer
Experiment Factors: genetic line
GeneChip Type: Poplar61k
Experiment design (16 hybridizations)
genetic line
•overexpression CO1 •empty vec contol CO1 •overexpression CO2 •empty vec control CO2

123/574 Experiment PT41 CO2 network analysis in poplar
Submitter: PLEXdb Curator
Head of Lab: Cetin Yuceer
Experiment Factors: genetic line
GeneChip Type: Poplar61k
Experiment design (8 hybridizations)
genetic line
•overexpression CO2 •empty vec control CO2

124/574 Experiment PT40 CO1 network analysis in poplar
Submitter: PLEXdb Curator
Head of Lab: Cetin Yuceer
Experiment Factors: genetic line
GeneChip Type: Poplar61k
Experiment design (8 hybridizations)
genetic line
•overexpression CO1 •empty vec control C01

125/574 Experiment PT39 Comparison of male and female floral organs
Submitter: PLEXdb Curator
Head of Lab: Joshua Adams
Experiment Factors: organism part name
GeneChip Type: Poplar61k
Experiment design (10 hybridizations)
organism part name
•Male Bud •Female bud

126/574 Experiment PT38 Time-course bud expression data from Populus deltoides
Submitter: PLEXdb Curator
Head of Lab: Joshua Adams
Experiment Factors: time
GeneChip Type: Poplar61k
Experiment design (15 hybridizations)
time
•April •May •June •July •August

127/574 Experiment PT37 affy_rnai_cadpoplars: Transcriptome analysis of RNAi-CAD transgenic poplars
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genetic line
GeneChip Type: Poplar61k
Experiment design (4 hybridizations)
genetic line
•RNAi-CAD •control

128/574 Experiment PT36 Transcriptome response to embolism in stems of P. trichocarpa
Submitter: PLEXdb Curator
Head of Lab: Maciej Zwieniecki
Experiment Factors: treatment
GeneChip Type: Poplar61k
Experiment design (9 hybridizations)
treatment
•control •embolism •sucrose

129/574 Experiment PT35 Genome-wide transcript profiling associated with metabolic regulation of Poplar N storage and cycling
Submitter: PLEXdb Curator
Head of Lab: Gary Coleman
Experiment Factors: treatment
GeneChip Type: Poplar61k
Experiment design (30 hybridizations)
treatment
•water 48hrs •water 72hrs •glutamin 48hrs •glutamin 72hrs •glucose 48hrs •glucose 72hrs •glutamine+glucose 48hrs •glutamine+glucose 72hrs •control 1 •preincubated control 2

130/574 Experiment PT34 Expression data of male and female floral bud with Populus tomentosa during their development process.
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name
GeneChip Type: Poplar61k
Experiment design (2 hybridizations)
organism part name
•male bud •female bud

131/574 Experiment PT33 Clone History Shapes Populus Drought Responses
Submitter: PLEXdb Curator
Head of Lab: Malcolm M. Campbell
Experiment Factors: genetic line, growth condition, time
GeneChip Type: Poplar61k
Experiment design (72 hybridizations)
time
•A.M. •P.M.
genetic line
•DN(MB) •DN(SK) •WK(AB) •WK(SK) •WP(AB) •WP(SK)
growth condition
•well-watered •water-limited

132/574 Experiment PT32 FT1 and FT2 network analysis in poplar
Submitter: PLEXdb Curator
Head of Lab: Cetin Yuceer
Experiment Factors: treatment
GeneChip Type: Poplar61k
Experiment design (25 hybridizations)
treatment
•Heat Inducible FT1 •Heat Inducible FT2 •Heat Inducible WT Control •Overexpression FT1 •Overexpression FT2 •Overexpression Control FT1 •Overexpression Control FT2

133/574 Experiment PT31 Isolation of poplar genes involved in xylem vessel differentiation
Submitter: PLEXdb Curator
Head of Lab: Taku Demura
Experiment Factors: compound
GeneChip Type: Poplar61k
Experiment design (6 hybridizations)
compound
•mock •DEX

134/574 Experiment PT30 Novel aspects of transcriptional regulation in the winter survival and maintenance mechanism of perennial woody plants, poplar.
Submitter: PLEXdb Curator
Head of Lab: Kyung-Hwan Han
Experiment Factors: growth condition
GeneChip Type: Poplar61k
Experiment design (4 hybridizations)
growth condition
•summer •winter

135/574 Experiment PT29 Time-course leaf expression data from Populus deltoides
Submitter: PLEXdb Curator
Head of Lab: Cetin Yuceer
Experiment Factors: time
GeneChip Type: Poplar61k
Experiment design (24 hybridizations)
time
•Feb05(pre-formed) •Mar05(pre-formed) •Sep05(pre-formed) •Dec05(pre-formed) •Mar06(pre-formed) •Apr06(mature) •May06(mature) •Jun06(mature)

136/574 Experiment PT28 affy_popsec_nancy_leaves2007_poplar -Molecular bases of acclimatation and adaptation to water deficit in poplar
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genotype, stress condition
GeneChip Type: Poplar61k
Experiment design (16 hybridizations)
genotype
•Soligo •Carpacio
stress condition
•control •mild water deficit •moderate water deficit •early-drought stress

137/574 Experiment PT27 affy_popsec_nancy_leaves2008_poplar -Molecular bases of acclimatation and adaptation to water deficit in poplar
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genotype, stress condition
GeneChip Type: Poplar61k
Experiment design (8 hybridizations)
genotype
•Soligo •Carpacio
stress condition
•control •water deficit

138/574 Experiment PT26 affy_popsec_nancy_roots_poplar -Molecular bases of acclimation and adaptation to water deficit in poplar
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: cultivar, stress condition
GeneChip Type: Poplar61k
Experiment design (16 hybridizations)
cultivar
•Soligo •Carpacio
stress condition
•Control(CTL) •mild water deficit(AMI) •moderate water deficit(AMO) •early-drought stress(EAR)

139/574 Experiment PT25 affy_popsec_nancy_pophydro_roots_poplar -Molecular bases of acclimation and adaptation to water deficit in poplar
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: stress condition
GeneChip Type: Poplar61k
Experiment design (4 hybridizations)
stress condition
•control •water deficit(PEG)

140/574 Experiment PT24 Poplar cultivars Soligo and Carpacio
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genetic line
GeneChip Type: Poplar61k
Experiment design (4 hybridizations)
genetic line
•Soligo gDNA •Carpacio gDNA

141/574 Experiment PT23 Intraspecific variation in the Populus balsamifera drought transcriptome
Submitter: PLEXdb Curator
Head of Lab: Malcolm M. Campbell
Experiment Factors: genotype, stress condition, time
GeneChip Type: Poplar61k
Experiment design (72 hybridizations)
genotype
•AP-947 •AP-1005 •AP-1006 •AP-2278 •AP-2298 •AP-2300
stress condition
•well watered •water limited
time
•predawn •midday

142/574 Experiment PT22 Genotype and time of day shape the Populus drought response
Submitter: PLEXdb Curator
Head of Lab: Malcolm M. Campbell
Experiment Factors: genotype, stress condition, time
GeneChip Type: Poplar61k
Experiment design (48 hybridizations)
genotype
•DN34 •NM6
time
•midnight •predawn •midday •lateday
stress condition
•well watered •water limited

143/574 Experiment PT21 Endogenous overexpression of Poplar MYB186 increases trichome density, improves growth rate and insect pest resistance
Submitter: PLEXdb Curator
Head of Lab: Sharon Regan
Experiment Factors: genotype
GeneChip Type: Poplar61k
Experiment design (6 hybridizations)
genotype
•wildtype •fuzzy

144/574 Experiment PT20 rewatering-Global gene expression in young differentiating xylem of poplar in response to a drought –rewatering cycle
Submitter: PLEXdb Curator
Head of Lab: Martin-Magniette ML
Experiment Factors: stress condition
GeneChip Type: Poplar61k
Experiment design (6 hybridizations)
stress condition
•Irrigated Control •Water Deficit •Water Deficit Recovery

145/574 Experiment PT19 Characterization of Populus Class III HDZIPs
Submitter: PLEXdb Curator
Head of Lab: Andrew Groover
Experiment Factors: genotype
GeneChip Type: Poplar61k
Experiment design (12 hybridizations)
genotype
•HBMut2-4-1 •HBMut3-8-1 •wildtype

146/574 Experiment PT18 Transcriptomic response to aluminum stress in roots of aspen (Populus tremula L.)
Submitter: PLEXdb Curator
Head of Lab: Christoph Sperisen
Experiment Factors: compound, time
GeneChip Type: Poplar61k
Experiment design (18 hybridizations)
compound
•aluminum •control
time
•6 hrs •54 hrs •246 hrs

147/574 Experiment PT17 Gene expression response of Populus tremuloides cell suspension cultures to methyl jasmonate feeding
Submitter: PLEXdb Curator
Head of Lab: Scott A. Harding
Experiment Factors: compound
GeneChip Type: Poplar61k
Experiment design (4 hybridizations)
compound
•methyl jasmonate •control

148/574 Experiment PT16 Wound-induced gene expression changes in Populus: 90 hours; clone RM5
Submitter: PLEXdb Curator
Head of Lab: Scott A. Harding
Experiment Factors: stress condition, tissue type name
GeneChip Type: Poplar61k
Experiment design (8 hybridizations)
tissue type name
•leaf(LPI5) •root
stress condition
•control •wounded

149/574 Experiment PT15 Wound-induced gene expression changes in Populus: 1 week; clone RM5
Submitter: PLEXdb Curator
Head of Lab: Scott A. Harding
Experiment Factors: developmental stage name, stress condition
GeneChip Type: Poplar61k
Experiment design (8 hybridizations)
developmental stage name
•mature(LPI5) •young(LPI1)
stress condition
•control •wounded

150/574 Experiment PT14 Expression data from GA-modified polpar transgenic roots
Submitter: PLEXdb Curator
Head of Lab: Victor B. Busov
Experiment Factors: genotype
GeneChip Type: Poplar61k
Experiment design (12 hybridizations)
genotype
•wildtype •GA2ox1_dwarf •GA2ox1_semidwarf •GA2ox1_WTlike •rgl1_WTlike •rgl1_dwarf

151/574 Experiment PT13 Expression data from poplar apices
Submitter: PLEXdb Curator
Head of Lab: Victor Busov
Experiment Factors: genotype
GeneChip Type: Poplar61k
Experiment design (4 hybridizations)
genotype
•P35S::EBB1 •wildtype

152/574 Experiment PT11 Genome scale transcriptome analysis of shoot organogenesis in poplar
Submitter: PLEXdb Curator
Head of Lab: Steven H. Strauss
Experiment Factors: Organ Induction
GeneChip Type: Poplar61k
Experiment design (10 hybridizations)
Organ Induction
•before_cal_ind •3d_after_cal_ind •15d_after_cal_ind •3d_after_shoot_ind •8d_after_shoot_ind

153/574 Experiment PT10 Habituation to thaxtomin A provides enhanced and durable resistance to inhibitors of cellulose synthesis
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound
GeneChip Type: Poplar61k
Experiment design (6 hybridizations)
compound
•Non_Habituated •TA_Habituated

154/574 Experiment PT9 Expression profiling and functional analysis of poplar WRKY23 reveals a regulatory role in defense
Submitter: PLEXdb Curator
Head of Lab: Armand Séguin
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: Poplar61k
Experiment design (15 hybridizations)
pathogen inoculation
•Mock-inoculated •Mmt-inoculated
genotype
•Wild Type •WRKY23-overexpressor •WRKY23-RNAi

155/574 Experiment PT8 Expression profiling and functional analysis of poplar WRKY23 reveals a regulatory role in defense: WRKY23-RNAi
Submitter: PLEXdb Curator
Head of Lab: Armand Séguin
Experiment Factors: genotype
GeneChip Type: Poplar61k
Experiment design (6 hybridizations)
genotype
•Wild Type •WRKY23-RNAi

156/574 Experiment PT7 Expression profiling and functional analysis of poplar WRKY23 reveals a regulatory role in defense: WRKY23-overexpressor
Submitter: PLEXdb Curator
Head of Lab: Armand Séguin
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: Poplar61k
Experiment design (12 hybridizations)
genotype
•Wild Type •WRKY23-overexpressor
pathogen inoculation
•Mock •Mmt-inoculated

157/574 Experiment PT6 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name, line, stress condition, treatment
GeneChip Type: Poplar61k
Experiment design (24 hybridizations)
line
•clone1979 •clone3200
developmental stage name
•young(LPI2) •mature(LPI5)
stress condition
•5 mM (N+) •0.125 mM (N-)
treatment
•4weeks •8weeks

158/574 Experiment PT5 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name, stress condition, treatment
GeneChip Type: Poplar61k
Experiment design (12 hybridizations)
developmental stage name
•young(LPI2) •mature(LPI5)
stress condition
•5 mM (N+) •0.125 mM (N-)
treatment
•4weeks •8weeks

159/574 Experiment PT4 Effect of hypoxia on gene expression in Grey poplar
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name, time, treatment
GeneChip Type: Poplar61k
Experiment design (30 hybridizations)
time
•0 hrs •5 hrs •24 hrs •168 hrs
organism part name
•leaf •root
treatment
•control •flooded

160/574 Experiment PT3 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name, stress condition, treatment
GeneChip Type: Poplar61k
Experiment design (12 hybridizations)
developmental stage name
•young(LPI2) •mature(LPI5)
stress condition
•5 mM (N+) •0.125 mM (N-)
treatment
•4 weeks •8 weeks

161/574 Experiment PT2 Populus balsamifera developmental tissue series
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: tissue type name
GeneChip Type: Poplar61k
Experiment design (27 hybridizations)
tissue type name
•Seedling_continuous_light •Etiolated_seedling_6d_transfered_to_light •Etiolated_seedling •young_leaf_midday •root_midday •differentiating_xylem_midday •Female_Catkin_midday •Male_Catkin_midday •mature_leaf_midday

162/574 Experiment PT1 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: infection
GeneChip Type: Poplar61k
Experiment design (12 hybridizations)
infection
•Non_infected •Mlp_infected •Mmd_infected •Mixed_infected

Rice57k
163/574 Experiment OS102 Expression data from IR64 rice transformed with 35S::OsPSTOL1 gene
Submitter: PLEXdb Curator
Head of Lab: Sigrid Heuer
Experiment Factors: genotype, nutrient
GeneChip Type: Rice57k
Experiment design (8 hybridizations)
genotype
•transgenic •non-transgenic
nutrient
•P deficient •P fertilized

164/574 Experiment OS101 Comparison of transcriptome profile between wild-type and dao mutant plants
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•wildtype •dao mutant

165/574 Experiment OS100 Expression data from OsRP1L1-overexpressing plant leaf in japonica rice (cv. Ishikari-shiroge (I-S))
Submitter: PLEXdb Curator
Head of Lab: Jianping Chen
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•OsRP1L1 overexpressing •Wild type

166/574 Experiment OS99 Comparative Transcriptomes Profiling of Photoperiod-sensitive Male Sterile Rice Nongken 58S between Short Day and Long Day Condition
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name, photoperiod
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
photoperiod
•LD •SD
developmental stage name
•pistil/stamen •glume pds

167/574 Experiment OS98 Nitrogen-efficient rice over-expressing alanine aminotransferase
Submitter: PLEXdb Curator
Head of Lab: Perrin Hudson Beatty
Experiment Factors: genetic line, organism part name
GeneChip Type: Rice57k
Experiment design (32 hybridizations)
organism part name
•shoot •root
genetic line
•wildtype-NB •AlaAT-ox-1/7 •AlaAT-ox-1/8 •AlaAT-ox-3/8

168/574 Experiment OS97 Comparison of transcriptome profile between wild-type and Epi-df mutant plants
Submitter: PLEXdb Curator
Head of Lab: Li Zhi-Kang
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•WT •Epi-df

169/574 Experiment OS96 Expression data of one-week-old rice seedlings exposed to Pi-deficient solution for 6, 24, 48, 72 hours
Submitter: PLEXdb Curator
Head of Lab: Wen-Hao Zhang
Experiment Factors: nutrient
GeneChip Type: Rice57k
Experiment design (10 hybridizations)
nutrient
•Pi sufficient control •Pi deficient 6 hrs •Pi deficient 24 hrs •Pi deficient 48 hrs •Pi deficient 72 hrs

170/574 Experiment OS95 Genome-wide gene expression profiling of rice Zhonghua11 and ila1 lamina joint
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
genotype
•WT ZH11 •mutant ila1

171/574 Experiment OS94 Gene expression in mature pollen and sperm cells versus young seedling as a vegetative sporophyte reference control
Submitter: PLEXdb Curator
Head of Lab: Scott D Russell
Experiment Factors: developmental stage name
GeneChip Type: Rice57k
Experiment design (9 hybridizations)
developmental stage name
•seedling V3 stage •pollen at anthesis •sperm at anthesis

172/574 Experiment OS93 Gene Expression Profiling during Male Gametophyte Development in Rice
Submitter: PLEXdb Curator
Head of Lab: Sheng-hua Wang
Experiment Factors: developmental stage name
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
developmental stage name
•UNM •BCP •TCP

173/574 Experiment OS92 Rice gene global expression during nonhost interaction with Blumeria graminis f. sp. hordei (Bgh)
Submitter: PLEXdb Curator
Head of Lab: Pamela Abbruscato
Experiment Factors: pathogen infection
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
pathogen infection
•Bgh •mock

174/574 Experiment OS91 Rice gene global expression analysis upon inoculation with different Magnaporthe isolates
Submitter: PLEXdb Curator
Head of Lab: Pamela Abbruscato
Experiment Factors: pathogen inoculation
GeneChip Type: Rice57k
Experiment design (15 hybridizations)
pathogen inoculation
•BR29 •BR32 •CL367 •FR13 •mock

175/574 Experiment OS90 Expression data from rice seeds during low temperature treatment
Submitter: PLEXdb Curator
Head of Lab: Hong-Wei Xue
Experiment Factors: cultivar, treatment
GeneChip Type: Rice57k
Experiment design (16 hybridizations)
cultivar
•Hanfeng •Zhonghua11
treatment
•4DAF-2d cold •4DAF-2d normal •4DAF •10DAF-2d cold •10 DAF-2d normal •10DAF

176/574 Experiment OS89 Expression data from rice embryo and endosperm development
Submitter: PLEXdb Curator
Head of Lab: Hong-Wei Xue
Experiment Factors: developmental stage name, tissue type name
GeneChip Type: Rice57k
Experiment design (14 hybridizations)
tissue type name
•ovary •embryo •endosperm
developmental stage name
•0 DAF •3 DAF •9 DAF •12 DAF •16 DAF

177/574 Experiment OS88 Gene expression profiling of rice embryogenic calli after Agrobacterium infection (Part 2-probe selection)
Submitter: PLEXdb Curator
Head of Lab: Yongjun Lin
Experiment Factors: genomic DNA
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genomic DNA
•Nipponbare gDNA •Zhensan gDNA

178/574 Experiment OS87 Gene expression profiling of rice embryogenic calli after Agrobacterium infection (part 1-gene expression)
Submitter: PLEXdb Curator
Head of Lab: Yongjun Lin
Experiment Factors: cultivar, time
GeneChip Type: Rice57k
Experiment design (30 hybridizations)
cultivar
•Nipponbare •Zhenshan 97
time
•0 hrs •1 hrs •6 hrs •12 hrs •24 hrs

179/574 Experiment OS86 Expression data from LRK1 060615 transgenic rice and control 9311
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (2 hybridizations)
genotype
•control •LRK1 transgenic

180/574 Experiment OS85 Expression data from infected (Xanthomonas oryzae pv. Oryzae (P10)) leaf in japonica rice (cv. Y73)
Submitter: PLEXdb Curator
Head of Lab: Jianping Chen
Experiment Factors: pathogen inoculation
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
pathogen inoculation
•Xoo •mock

181/574 Experiment OS84 Differential expression for salt and drought stress
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: strain, stress condition
GeneChip Type: Rice57k
Experiment design (16 hybridizations)
strain
•drought sensitive •drought tolerant •salt sensitive •salt tolerant
stress condition
•drought stress •salt stress •control

182/574 Experiment OS83 Expression profile of high yielding rice introgression line
Submitter: PLEXdb Curator
Head of Lab: Sarla Neelamraju
Experiment Factors: developmental stage name, genetic line
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
genetic line
•KMR3 •IL50-7
developmental stage name
•flag leaf •panicle

183/574 Experiment OS82 Expression data from rice after brown planthopper attack
Submitter: PLEXdb Curator
Head of Lab: Xue-Xia Miao
Experiment Factors: cultivar, time
GeneChip Type: Rice57k
Experiment design (18 hybridizations)
cultivar
•RHT •TN1
time
•0 hrs •8 hrs •24 hrs

184/574 Experiment OS81 Global gene expression profiles of Oryza sativa wild type Nipponbare and mutant coi1-13
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•Nipponbare •coi1-13

185/574 Experiment OS80 Express data from rice endosperm
Submitter: PLEXdb Curator
Head of Lab: Zhaohua Peng
Experiment Factors: developmental stage name
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
developmental stage name
•endosperm •leaf (control)

186/574 Experiment OS79 A single functional blast resistance gene Pi54 activates complex defense mechanism in Rice
Submitter: PLEXdb Curator
Head of Lab: Dr. Tilak Raj Sharma
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: Rice57k
Experiment design (8 hybridizations)
genotype
•TP •TP-Pi54
pathogen inoculation
•control •inoculated

187/574 Experiment OS78 Expression data from transgenic rice with anti-OsPDCD5
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line, treatment
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genetic line
•nontransgenic •transgenic
treatment
•normal (No NaCl) •20mins NaCl •3 hrs NaCl

188/574 Experiment OS77 Expression data from rice varieties IRAT109 and ZS97 for drought stress treatment in flag leaves
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, treatment
GeneChip Type: Rice57k
Experiment design (16 hybridizations)
genotype
•IRAT109 •ZS97
treatment
•no stress •slight •moderate •severe

189/574 Experiment OS76 Differential expression for rice-gall midge interaction
Submitter: PLEXdb Curator
Head of Lab: J. S. Bentur
Experiment Factors: insect infestation
GeneChip Type: Rice57k
Experiment design (9 hybridizations)
insect infestation
•control •GMB1 •GMB4M

190/574 Experiment OS75 DNA microarray data from transgenic rice Huahui 1 (HH1) and its parent Minghui 63 (MH63)
Submitter: PLEXdb Curator
Head of Lab: Zhi Liu
Experiment Factors: treatment
GeneChip Type: Rice57k
Experiment design (60 hybridizations)
treatment
•HH1-30 •MH63-30 •HH1-60 •MH63-60 •HH1-75 •MH63-75 •HH1-90 •MH63-90 •HH1-HT •MH63-HT •HH1-LT •MH63-LT •HH1-Jxol •MH63-Jxol •HH1-Pxo99 •MH63-Pxo99 •HH1-Rs105 •MH63-Rs105 •HH1-Xv5 •MH63-Xv5

191/574 Experiment OS74 DNA microarray data from transgenic rice KMD and its parent XS11
Submitter: PLEXdb Curator
Head of Lab: Zhi Liu
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•KMD •XS11

192/574 Experiment OS73 Expression comparasion of rice seedlings of Osabl1 mutant and WT under ABA treatment
Submitter: PLEXdb Curator
Head of Lab: Dr. Hong-Wei Xue
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
genotype
•WT •Osabl1

193/574 Experiment OS72 Expression data from PSARK::IPT and wildtype rice plants
Submitter: PLEXdb Curator
Head of Lab: Eduardo Blumwald
Experiment Factors: genotype, stress condition
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
genotype
•WT •PSARK::IPT
stress condition
•well watered •water stressed

194/574 Experiment OS71 Expression data from shoot bases of rice seedling after gravistimulation
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name, time
GeneChip Type: Rice57k
Experiment design (15 hybridizations)
organism part name
•control •shoot base upper •shoot base lower
time
•0 hrs •.50 hrs •6 hrs

195/574 Experiment OS70 affy_meloidogyne_rice2-Oryza sativa genes expressed in the early compatible interaction with root-knot nematode
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: pathogen inoculation
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
pathogen inoculation
•control •inoculated

196/574 Experiment OS69 Oryza sativa genes expressed in the early compatible interaction with root-knot nematode (affy_meloidogyne_rice)
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: time
GeneChip Type: Rice57k
Experiment design (9 hybridizations)
time
•0 hpi •48 hpi •96 hpi

197/574 Experiment OS68 Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice
Submitter: PLEXdb Curator
Head of Lab: Pascal Gantet
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•WT •crl1 mutant

198/574 Experiment OS67 Expression data from transgenic rice with OsEATB
Submitter: PLEXdb Curator
Head of Lab: Jinshui Yang
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (2 hybridizations)
genotype
•nontransgenic •transgenic

199/574 Experiment OS66 Comparison of transcriptional responses of two susceptible rice cultivars to strains of Xanthomonas oryzae
Submitter: Frank White
Head of Lab: Frank White
Experiment Factors: cultivar, strain
GeneChip Type: Rice57k
Experiment design (65 hybridizations)
cultivar
•Nipponbare •IR24
strain
•PXO99A •PXO99AME7 •PXO99AME5 •MOCK •NO TREATMENT •T7174 •PXO86 •BLS303 •PXO99AME1 •PXO99AME2 •PXO99A-2

200/574 Experiment OS65 Whole-Genome Analysis of SSB Larvae Infestation Regulated Rice Genes
Submitter: PLEXdb Curator
Head of Lab: Guoxin Zhou
Experiment Factors: insect infestation
GeneChip Type: Rice57k
Experiment design (3 hybridizations)
insect infestation
•control •SSB infested

201/574 Experiment OS64 Transcriptome Phase Distribution Analysis Reveals Diurnal Regulated Biological Processes and Key Pathways in Rice Flag Leaves and Seedling Leaves
Submitter: PLEXdb Curator
Head of Lab: Yongbiao Xue
Experiment Factors: developmental stage name, time
GeneChip Type: Rice57k
Experiment design (40 hybridizations)
developmental stage name
•Seedling leaf •Flag Leaf
time
•Time 1 •Time 2 •Time 3 •Time 4 •Time 5 •Time 6 •Time 7 •Time 8 •Time 9 •Time 10

202/574 Experiment OS63 genome-wide gene expression profiling of rice pollen in defferent developmetn stages
Submitter: PLEXdb Curator
Head of Lab: Tai Wang
Experiment Factors: developmental stage name
GeneChip Type: Rice57k
Experiment design (24 hybridizations)
developmental stage name
•callus cell •leaf •root •uninucleate microspores •bicellular pollen •tricellular pollen •mature pollen •germinated pollen

203/574 Experiment OS62 Analysis of anther transcriptomes to identify genes contributing to meiosis and male gametophyte development in rice
Submitter: PLEXdb Curator
Head of Lab: Sanjay Kapoor
Experiment Factors: developmental stage name
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
developmental stage name
•pre-meiotic anther •meiotic anther •anther(single celled pollen) •anther(trinucleate pollen)

204/574 Experiment OS61 Expression analysis of genes in the lamina joint of lc1 mutant compared with that of wild-type
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
genotype
•wild type •lc1 mutant

205/574 Experiment OS60 A global analysis of QTLs for expression variations in rice shoot at early seedling stage
Submitter: PLEXdb Curator
Head of Lab: Qifa Zhang
Experiment Factors: genetic line
GeneChip Type: Rice57k
Experiment design (226 hybridizations)
genetic line
•001 •004 •005 •006 •007 •009 •012 •013 •014 •015 •016 •017 •018 •019 •020 •022 •023 •026 •027 •030 •039 •042 •047 •048 •053 •054 •059 •062 •066 •068 •071 •072 •077 •080 •081 •082 •083 •084 •086 •087 •089 •090 •095 •099 •101 •103 •105 •106 •109 •111 •112 •114 •118 •123 •125 •129 •131 •133 •134 •137 •139 •140 •141 •145 •147 •149 •150 •151 •152 •154 •155 •156 •159 •160 •161 •162 •163 •164 •165 •167 •169 •173 •175 •178 •180 •183 •184 •185 •186 •187 •191 •192 •193 •195 •197 •198 •199 •203 •204 •205 •206 •209 •210 •215 •216 •219 •232 •236 •238 •241 •Zhenshan 97 •Minghui 63

206/574 Experiment OS58 Expression data from rice seedlings of wild type and the CHR729 mutant
Submitter: PLEXdb Curator
Head of Lab: Dao-Xiu Zhou
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•CHR729 T-DNA mutant •wild type

207/574 Experiment OS57 Identification of Rhizome-Specific Genes by Genome-wide Differential Expression Analysis in Oryza longistaminata
Submitter: PLEXdb Curator
Head of Lab: Binying Fu and Zhikang L
Experiment Factors: tissue type name
GeneChip Type: Rice57k
Experiment design (15 hybridizations)
tissue type name
•shoot tip •rhizome tip •rhizome internodes •shoot internodes •young leaf

208/574 Experiment OS56 Expression data from field droughted rice plants
Submitter: PLEXdb Curator
Head of Lab: Adam H Price
Experiment Factors: cultivar, stress condition
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
stress condition
•control •drought
cultivar
•Azucena •Bala

209/574 Experiment OS55 Rice leaf transcriptome from 6 week old plants
Submitter: PLEXdb Curator
Head of Lab: Pamela C. Ronald
Experiment Factors: cultivar
GeneChip Type: Rice57k
Experiment design (3 hybridizations)
cultivar
•Kitaake

210/574 Experiment OS54 Genome-wide gene expression of rice cultivar Gui-630 (Indica) X Taiwanjing (Japonica) and mutant lemmata (lem) panicle
Submitter: PLEXdb Curator
Head of Lab: Yongbiao Xue
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•lemmata mutant •wildtype

211/574 Experiment OS53 Transgenic rice line carrying the maize resistance gene Rxo1 to Xanthomonas oryzae pv. oryzicola
Submitter: PLEXdb Curator
Head of Lab: Zhi-Kang Li
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
genotype
•transgenic(9804-Rxo1) •9804
pathogen inoculation
•Xoc inoculated •control

212/574 Experiment OS52 Microarray data from aerial tissue of submergence tolerant M202(Sub1) and intolerant M202
Submitter: PLEXdb Curator
Head of Lab: Julia Bailey-Serres
Experiment Factors: genotype, stress condition
GeneChip Type: Rice57k
Experiment design (8 hybridizations)
genotype
•M202 •M202(Sub1)
stress condition
•control •submerged

213/574 Experiment OS51 bulked RILs with high and low grain number per panicle derived from 2 cultivars at panicle primordia stage
Submitter: PLEXdb Curator
Head of Lab: Nagendra K. Singh
Experiment Factors: genetic line
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
genetic line
•bulkRIL(high grain no) •bulkRIL(low grain no)

214/574 Experiment OS50 Transcription profiling of parental lines and bulked salt sensitive and salt tolerant RILs derived from 2 rice varieties
Submitter: PLEXdb Curator
Head of Lab: Nagendra K. Singh
Experiment Factors: genetic line, stress condition
GeneChip Type: Rice57k
Experiment design (16 hybridizations)
genetic line
•MI48 •CSR27 •Bulk tolerant •Bulk sensitive
stress condition
•control •salt stressed

215/574 Experiment OS49 Whole genome transcriptome profiling of Pusa 1266 and Pusa Basmati 1 in panicle primordia stage
Submitter: PLEXdb Curator
Head of Lab: Nagendra Singh
Experiment Factors: cultivar
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
cultivar
•Pusa1266 •Pusa Basmati

216/574 Experiment OS48 Temporal regulatory role of miR156 during leaf ontogenesis
Submitter: PLEXdb Curator
Head of Lab: Lizhong Xiong
Experiment Factors: genotype, tissue type name
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
tissue type name
•younger leaves(L1) •older leaves(L4-5)
genotype
•miR156 •wildtype

217/574 Experiment OS47 Gene expression in leaf blades of the rice Os-LBD37 overexpressor line RK16331-13
Submitter: PLEXdb Curator
Head of Lab: Kazuki Saito
Experiment Factors: genetic line
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genetic line
•empty vector control •Os-LBD37 overexpressor

218/574 Experiment OS46 Rice expression atlas: Plant reproductive process
Submitter: PLEXdb Curator
Head of Lab: Nori Kurata
Experiment Factors: tissue type name
GeneChip Type: Rice57k
Experiment design (98 hybridizations)
tissue type name
•Anther at An1 •Anther at Mei1 •Anther at M1 •Anther at M2 •Anther at M3 •Anther at P1 •Anther at P2 •Anther at P3 •Stigma control •Ovary control •Pollinating stigma •Pollinating ovary •Pollen tube growth •Fertilization •Zygote formation •Embryosac control_bottom •embryosac_bottom 1 DAP •embryosac_bottom 2 DAP •embryosac_bottom 3 DAP •embryosac_bottom 4 DAP •Embryosac control_top •embryosac_top 1 DAP •embryosac_top 2 DAP •embryosac_top 3 DAP •embryosac_top 4 DAP •Growing callus •Regenerating callus 2 days •Regenerating callus 4 days •Regenerating callus 6 days •Regenerating callus 8 days •Root •Shoot •Young leaf

219/574 Experiment OS45 Rice expression atlas (4): Vegetative tissues
Submitter: PLEXdb Curator
Head of Lab: Nori Kurata
Experiment Factors: tissue type name
GeneChip Type: Rice57k
Experiment design (25 hybridizations)
tissue type name
•growing callus •regenerating callus 2d •regenerating callus 4d •regenerating callus 6d •regenerating callus 8d •root •shoot •young leaf

220/574 Experiment OS44 Rice expression atlas (3): Early embryogenesis
Submitter: PLEXdb Curator
Head of Lab: Nori Kurata
Experiment Factors: organism part name, time
GeneChip Type: Rice57k
Experiment design (27 hybridizations)
organism part name
•embryo sac bottom •embryo sac top
time
•control •1 DAP •2 DAP •3 DAP •4 DAP

221/574 Experiment OS43 Rice expression atlas (2): Pollination - Fertilization
Submitter: PLEXdb Curator
Head of Lab: Nori Kurata
Experiment Factors: tissue type name
GeneChip Type: Rice57k
Experiment design (20 hybridizations)
tissue type name
•Stigma control •Ovary control •Pollinating stigma •Pollinating ovary •Pollen tube growth •Fertilization •Zygote formation

222/574 Experiment OS42 Rice expression atlas (1): Anther development
Submitter: PLEXdb Curator
Head of Lab: Nori Kurata
Experiment Factors: developmental stage name
GeneChip Type: Rice57k
Experiment design (26 hybridizations)
developmental stage name
•Anther An1 •Anther Mei1 •Anther M1 •Anther M2 •Anther M3 •Anther P1 •Anther P2 •Anther P3

223/574 Experiment OS41 Expression data from rice genotypes FL478 and IR29
Submitter: PLEXdb Curator
Head of Lab: Harkamal Walia
Experiment Factors: genotype, stress condition
GeneChip Type: Rice57k
Experiment design (11 hybridizations)
genotype
•FL478 •IR29
stress condition
•control •salt

224/574 Experiment OS40 Transcriptional profiling of Cellulase induced hypersensitive reaction like response in rice
Submitter: PLEXdb Curator
Head of Lab: Ramesh V. Sonti
Experiment Factors: compound
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
compound
•potassium phosphate buffer •Xoo cellulase

225/574 Experiment OS39 Comparsion of gene expression profile in polaris (pola) mutant lines and its POLARIS (POLA) wild-type at meiotic and ripening stages
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name, genotype
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
genotype
•wild type •pola mutant •pola RNAi
developmental stage name
•meiotic stage •ripening stage

226/574 Experiment OS38 affy_xoo_rice-Transcriptomics-based identification of Xoo strain BAI3 Talc targets in rice
Submitter: PLEXdb Curator
Head of Lab: J. Sáez-Vásquez
Experiment Factors: pathogen inoculation
GeneChip Type: Rice57k
Experiment design (9 hybridizations)
pathogen inoculation
•Xoo(BAI3 delta talc) •mock •Xoo(BAI3)

227/574 Experiment OS37 Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice
Submitter: PLEXdb Curator
Head of Lab: Bin-Ying Fu and Zhi-Kang Li
Experiment Factors: developmental stage name, stress condition, tissue type name
GeneChip Type: Rice57k
Experiment design (36 hybridizations)
stress condition
•control •drought
tissue type name
•leaves •roots •panicle
developmental stage name
•tillering stage •panicle elongation stage •booting stage

228/574 Experiment OS36 Methanol is an endogenous elicitor molecule upon senescence of detached rice leaves
Submitter: PLEXdb Curator
Head of Lab: Kyoungwhan Back
Experiment Factors: compound
GeneChip Type: Rice57k
Experiment design (3 hybridizations)
compound
•water •MeOH

229/574 Experiment OS35 Temporal gene expression analyisis from rice root (cv. Nipponbare) infected with Magnaporthe oryzae strain Guy11
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen inoculation, time
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
pathogen inoculation
•Mock •Guy11_inoculated
time
•2 dpi •4 dpi •6 dpi

230/574 Experiment OS34 Comparison of transcriptome profile between wild-type and dst mutant plants
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•Wild_Type •dst

231/574 Experiment OS33 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
genotype
•Wild Type •pheonix

232/574 Experiment OS32 Dissecting the developmental transcriptomes of rice
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: cultivar, organism part name
GeneChip Type: Rice57k
Experiment design (190 hybridizations)
cultivar
•Minghui63 •Zhenshan97
organism part name
•callus1 •callus2 •callus3 •callus4 •callus5 •callus6 •callus7 •callus8 •germinating_seed •plumule1 •radicle1 •plumule2 •radicle2 •seedling3 •seedling4 •seedling5 •shoot •root •leaf1 •sheath1 •leaf2 •sheath2 •panicle4 •stem1 •leaf3 •stem2 •panicle5 •palea/lemma •stamen •spikelet •endosperm1 •endosperm2 •endosperm3 •leaf4 •seedling1 •seedling2 •panicle1 •panicle2 •panicle3

233/574 Experiment OS31 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound1, compound2, organism part name
GeneChip Type: Rice57k
Experiment design (16 hybridizations)
organism part name
•Root •Shoot
compound1
•full_P •no_P
compound2
•full_Fe •no_Fe

234/574 Experiment OS30 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, stress condition
GeneChip Type: Rice57k
Experiment design (23 hybridizations)
genotype
•FL478 •IR29 •IR63731 •Pokkali
stress condition
•Control •Salt

235/574 Experiment OS29 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: cultivar
GeneChip Type: Rice57k
Experiment design (10 hybridizations)
cultivar
•Nipponbare •93-11

236/574 Experiment OS28 Rice seedling hormone treatment
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: treatment
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
treatment
•control •IAA treated •BAP treated

237/574 Experiment OS27 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: Rice57k
Experiment design (9 hybridizations)
genetic line
•Transgenic line 4 •Transgenic line 22 •Wild-type

238/574 Experiment OS26 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (17 hybridizations)
genotype
•mutant_d1 •mutant_d256 •mutant_d1137 •mutant_d2943 •mutant_g282 •mutant_g650 •mutant_g6485 •mutant_g6489 •mutant_g6603 •mutant_g6686 •mutant_g6728 •mutant_g7534 •mutant_g9799 •mutant_g6989 •mutant_f1856 •mutant_f2045 •wildtype_control

239/574 Experiment OS25 Expression data for heat shock in rice seedlings
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: stress condition
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
stress condition
•control •heat shock

240/574 Experiment OS24 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: line
GeneChip Type: Rice57k
Experiment design (14 hybridizations)
line
•stable transgenic(Bengal) •control for stable transgenic(Bengal) •control for unstable(Nipponbare) •unstable transgenic(Nipponbare) •mutant stable(EstrelaA) •control mutant stable(EstrelaA) •unstable mutant(Nipponbare)

241/574 Experiment OS23 Transcriptome analysis of gibberellin-signaling mutants in rice
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
genetic line
•Taichung 65 •gid1-3 •gid2-1 •slr1(k1001)

242/574 Experiment OS22 antiOsLIC collar chip
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: antisense transgenic
GeneChip Type: Rice57k
Experiment design (2 hybridizations)
antisense transgenic
•wildtype_control •antiOcLIC

243/574 Experiment OS21 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: phenotype
GeneChip Type: Rice57k
Experiment design (2 hybridizations)
phenotype
•yellow leaf tip •green leaf tip

244/574 Experiment OS20 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, root response
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
genotype
•Azucena •Bala
root response
•at wax level •buckled at wax level •before wax level

245/574 Experiment OS19 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: cultivar, infection, time
GeneChip Type: Rice57k
Experiment design (24 hybridizations)
cultivar
•IAC165(susceptible) •Nipponbare(resistant)
time
•2 dpi •4 dpi •11 dpi
infection
•mock •parasite

246/574 Experiment OS18 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•S58S(overexpressor) •S59R(repressed) •wildtype(control)

247/574 Experiment OS17 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•Zhonghua11(wildtype) •gif1(mutant)

248/574 Experiment OS16 Genome-wide gene expression profiling of rice stigma
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name
GeneChip Type: Rice57k
Experiment design (13 hybridizations)
organism part name
•stigma •ovary •suspension cultured cells •seedling shoot •seedling root •mature anther •embryo 10day •endosperm 10day •seed 5DAP

249/574 Experiment OS15 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: RNAi_transgenic
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
RNAi_transgenic
•WT_control •RNAi_transgenic

250/574 Experiment OS14 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: stress condition
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
stress condition
•aerobic_control •anoxic

251/574 Experiment OS13 Gene expression in OsRR6-overexpression line
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
genetic line
•control •OsRR6-overexpressor

252/574 Experiment OS12 Cytokinin responsive genes in rice
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound, organism part name, time
GeneChip Type: Rice57k
Experiment design (24 hybridizations)
organism part name
•root •leaf
compound
•DMSO •tZeatin
time
•30 mins •120 mins

253/574 Experiment OS11 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound, cultivar
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
cultivar
•Bala •Azucena
compound
•0ppm Arsenate (Control) •1ppm Arsenate

254/574 Experiment OS10 Expression data for stress treatment in rice seedlings
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: stress condition
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
stress condition
•Control •Drought •Salt •Cold

255/574 Experiment OS9 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: disease type, genotype
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
genotype
•WuYun3 •KT95-418
disease type
•RSV-infected •non-infected

256/574 Experiment OS8 Expression data from rice embryo,endosperm,root,leaf and seedling
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name
GeneChip Type: Rice57k
Experiment design (10 hybridizations)
organism part name
•emb6D •endo6D •leaf •root •seedling

257/574 Experiment OS7 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: Pathogen Inoculation, time
GeneChip Type: Rice57k
Experiment design (8 hybridizations)
Pathogen Inoculation
•mock •FR13
time
•3 dpi •4 dpi

258/574 Experiment OS6 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
Submitter: PLEXdb Curator
Head of Lab: xx
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (9 hybridizations)
genotype
•OsWRKY13_Overexp_D11UM1-1 •OsWRKY13_Overexp_D11UM7-2 •wildtype_control

259/574 Experiment OS5 Expression data for reproductive development in rice
Submitter: PLEXdb Curator
Experiment Factors: developmental stage name
GeneChip Type: Rice57k
Experiment design (45 hybridizations)
developmental stage name
•Root, 7-day-old Seedling •Mature leaf •Y Leaf •SAM •Young inflorescence (P1, upto 3 cm) •Inflorescence (P2, 3 - 5 cm) •Inflorescence (P3, 5 - 10 cm) •Inflorescence (P4, 10 - 15 cm) •Inflorescence (P5, 15 - 22 cm) •Inflorescence (P6, 22 - 30 cm) •Seed (S1, 0 - 2 dap) •Seed (S2, 3 - 4 dap) •Seed (S3, 5 - 10 dap) •Seed (S4, 11 - 20 dap) •Seed (S5, 21 - 29 dap)

260/574 Experiment OS4 Resistance gene-dependent responses in rice to the bacterial blight pathogen Xanthomonas oryzae pv. oryzae
Submitter: David O Nino-Liu
Head of Lab: Adam J Bogdanove
Experiment Factors: genotype, time
GeneChip Type: Rice57k
Experiment design (45 hybridizations)
genotype
•IR24 •IRBB5 •IRBB7
time
•0 hai •3 hai •6 hai •12 hai •24 hai

261/574 Experiment OS3 Comparative transcriptional profiling of rice undergoing infection by Xanthomonas oryzae pv. oryzae or by X. oryzae pv. oryzicola
Submitter: David O Nino-Liu
Head of Lab: Adam Bogdanove
Experiment Factors: pathogen isolates, time
GeneChip Type: Rice57k
Experiment design (60 hybridizations)
pathogen isolates
•XOC •XOO •MOCK
time
•2 hai •4 hai •8 hai •24 hai •96 hai

262/574 Experiment OS2 Comparative Transcriptional Profiling of Two Contrasting Rice Genotypes under Salinity Stress during the Vegetative Growth Stage
Submitter: PLEXdb Curator
Head of Lab: Timothy Close
Experiment Factors: genetic line, stress condition
GeneChip Type: Rice57k
Experiment design (11 hybridizations)
genetic line
•FL478 •IR29
stress condition
•control •salt stress

263/574 Experiment OS1 Rice 57K Affymetrix GeneChip Test
Submitter: Lishuang Shen
Head of Lab: Timothy Close
Experiment Factors: dose
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
dose
•HiSpike •LowSpike

NineFungalArray_Fus_oxy
264/574 Experiment NF7 Gene expression during vegetative growth in complete liquid medium of Fusarium graminearum and Fusarium oxysporum and corresponding mutants in orthologous WOR1-like genes (NineFungalArray_Fus_oxy)
Submitter: Harold Corby Kistler
Head of Lab: H. Corby Kistler
Experiment Factors: genotype, species
GeneChip Type: NineFungalArray_Fus_oxy
Experiment design (6 hybridizations)
species
•Fusarium graminearum •Fusarium oxysporum
genotype
•wild type •mutant

NineFungalArray_Fus_gra
265/574 Experiment NF6 Gene expression during vegetative growth in complete liquid medium of Fusarium graminearum and Fusarium oxysporum and corresponding mutants in orthologous WOR1-like genes.(NineFungalArray_Fus_gra)
Submitter: Harold Corby Kistler
Head of Lab: H. Corby Kistler
Experiment Factors: genotype, species
GeneChip Type: NineFungalArray_Fus_gra
Experiment design (6 hybridizations)
species
•Fusarium graminearum •Fusarium oxysporum
genotype
•wild type •mutant

NineFungalArray_Fus_ver
266/574 Experiment NF4 Interaction of Fusarium verticillioides and Ustilago maydis in culture. (NineFungalArray_Fus_ver)
Submitter: Harold Corby Kistler
Head of Lab: H. Corby Kistler
Experiment Factors: pathogen strains, time
GeneChip Type: NineFungalArray_Fus_ver
Experiment design (12 hybridizations)
pathogen strains
•Ustilago maydis alone •Ustilago and Fusarium •Fusarium verticillioides alone
time
•2 days •5 days

NineFungalArray_Ust_may
267/574 Experiment NF3 Interaction of Fusarium verticillioides and Ustilago maydis in culture. (NineFungalArray_Ust_may)
Submitter: Harold Corby Kistler
Head of Lab: H. Corby Kistler
Experiment Factors: pathogen strains, time
GeneChip Type: NineFungalArray_Ust_may
Experiment design (12 hybridizations)
pathogen strains
•Ustilago maydis alone •Ustilago and Fusarium •Fusarium verticillioides alone
time
•2 days •5 days

NineFungalArray_Fus_gra
268/574 Experiment NF1 Wheat infection by a Fusarium graminearum Fgp1 mutant.
Submitter: Harold Corby Kistler
Head of Lab: H. Corby Kistler
Experiment Factors: genotype
GeneChip Type: NineFungalArray_Fus_gra
Experiment design (6 hybridizations)
genotype
•PH-1 •PH-1 ∆fgp1

Medicago61k
269/574 Experiment ME27 affy_med_2011_06-Analysis of the Medicago noot mutant
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: inoculation
GeneChip Type: Medicago61k
Experiment design (10 hybridizations)
inoculation
•WT root uninoculated •WT nodules inoculated •noot NF2717 nodules inoculated •noot Tnk507 nodules inoculated

270/574 Experiment ME26 plant genotype x rhizobium genotype interaction
Submitter: PLEXdb Curator
Head of Lab: Katy D Heath
Experiment Factors: genotype, pathogen strains
GeneChip Type: Medicago61k
Experiment design (12 hybridizations)
genotype
•Naut1 •Sals4
pathogen strains
•SalsB •SalsC

271/574 Experiment ME25 Gene expression data from phosphinothricin (PPT) treated Medicago truncatula root nodules
Submitter: PLEXdb Curator
Head of Lab: Helena Carvalho
Experiment Factors: compound
GeneChip Type: Medicago61k
Experiment design (12 hybridizations)
compound
•0 hr •4 hr •8 hr •24 hr

272/574 Experiment ME24 Medicago truncatula wild-type and mutant plantlet roots treated with symbiotic lipochitooligosaccharides
Submitter: PLEXdb Curator
Head of Lab: Helge Kuster
Experiment Factors: compound, genotype, time
GeneChip Type: Medicago61k
Experiment design (60 hybridizations)
genotype
•NFP mutant •DM13 mutant •Jemalong A17
compound
•sMyc-LCOs •nsMyc-LCOs •s/nsMyc-LCOs •Myc-LCOs-control •Nod-LCOs •Nod-LCO-control •control
time
•6 hrs •24 hrs

273/574 Experiment ME23 Gene expression data from Medicago truncatula mutant plantlet roots treated with Myc-LCOs.
Submitter: PLEXdb Curator
Head of Lab: Helge Kuster
Experiment Factors: compound, genotype
GeneChip Type: Medicago61k
Experiment design (24 hybridizations)
compound
•sMyc-LCOs •nsMyc-LCOs •s/nsMyc-LCOs •control
genotype
•NFP mutant •DM13 mutant

274/574 Experiment ME22 Gene expression data from Medicago truncatula plantlet roots treated with symbiotic lipochitooligosaccharides (LCOs).
Submitter: PLEXdb Curator
Head of Lab: Helge Kuster
Experiment Factors: compound, time
GeneChip Type: Medicago61k
Experiment design (36 hybridizations)
compound
•sMyc-LCOs •nsMyc-LCOs •s/nsMyc-LCOs •Myc-LCOs-control •Nod-LCOs •Nod-LCO-control
time
•6 hrs •24 hrs

275/574 Experiment ME21 Identification of genes involved in the establishment of plant-microorganism interactions
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: treatment
GeneChip Type: Medicago61k
Experiment design (12 hybridizations)
treatment
•zoneII Sin mel •surrounding cells Mel inc •giant cell Mel inc •root Sin mel

276/574 Experiment ME20 Gene expression during early stages of arbuscular mycorrhizal root formation in Medicago truncatula.
Submitter: PLEXdb Curator
Head of Lab: Paola Bonfante
Experiment Factors: genotype, treatment
GeneChip Type: Medicago61k
Experiment design (12 hybridizations)
treatment
•control •Myc
genotype
•A17 •DM13

277/574 Experiment ME19 Strigolactone biosynthesis requires the symbiotic GRAS-type transcription factors NSP1 and NSP2
Submitter: PLEXdb Curator
Head of Lab: René Geurts
Experiment Factors: genotype
GeneChip Type: Medicago61k
Experiment design (9 hybridizations)
genotype
•Mtnsp1-1 mutant •Mtnsp2-2 mutant •wildtype

278/574 Experiment ME18 Gene expression data from arbuscular mycorrhizal and phosphate-treated Medicago truncatula roots.
Submitter: PLEXdb Curator
Head of Lab: Helge Küster
Experiment Factors: pathogen inoculation, treatment
GeneChip Type: Medicago61k
Experiment design (12 hybridizations)
pathogen inoculation
•Gi-Myc •Gm-Myc •un-inoculated
treatment
•20miM-P •2mM-P

279/574 Experiment ME17 Transcriptom analysis of the interaction Medicago truncatula – Ralstonia solanacearum
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genetic line, time
GeneChip Type: Medicago61k
Experiment design (27 hybridizations)
genetic line
•A17 •Sickle •F83005.5
time
•0 hrs •12 hrs •72 hrs

280/574 Experiment ME16 Comparison of plant responses upon Aphanomyces euteiches infection in wild type (A17) and NFP allelic mutants
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: Medicago61k
Experiment design (12 hybridizations)
genotype
•nfp-2 •A17
pathogen inoculation
•inoculated •control

281/574 Experiment ME15 Expression data of Medicago truncatula Jemalong A17 roots treated with auxin transport inhibitors
Submitter: PLEXdb Curator
Head of Lab: Sharon R. Long
Experiment Factors: growth_regulator, time
GeneChip Type: Medicago61k
Experiment design (18 hybridizations)
growth_regulator
•Buffer •NPA •TIBA
time
•1 days •7 days

282/574 Experiment ME14 Expression data from Sinorhizobium meliloti strains Rm8530 and Rm8530 mucR.
Submitter: PLEXdb Curator
Head of Lab: Juan González
Experiment Factors: pathogen strains
GeneChip Type: Medicago61k
Experiment design (6 hybridizations)
pathogen strains
•Rm8530 •Rm8530 mucR

283/574 Experiment ME13 Identification of putative H2O2 regulated genes during the establishment of the Sinorhizobi...
Submitter: PLEXdb Curator
Head of Lab: Sandrine Balzergue
Experiment Factors: pathogen inoculation
GeneChip Type: Medicago61k
Experiment design (8 hybridizations)
pathogen inoculation
•DMSO-H2O(mock) •DPI-H2O(mock) •MSO-INOC(S. melitloti) •DPI-INCO(S. Meliloti)

284/574 Experiment ME12 affy_root-dvt-nitrogen_medicago: Genetic determinism of root development in Medicago truncatula
Submitter: PLEXdb Curator
Head of Lab: Sandrine Balzergue
Experiment Factors: genotype, nutrient
GeneChip Type: Medicago61k
Experiment design (12 hybridizations)
genotype
•J5(wild type) •Tr185(mutant)
nutrient
•1mM KNO3 •10mM KNO3

285/574 Experiment ME11 Identification of molecular factors explaining decreased hypocotyl growth at low temperature
Submitter: PLEXdb Curator
Head of Lab: Sandrine Balzergue
Experiment Factors: genotype, temperature, time
GeneChip Type: Medicago61k
Experiment design (24 hybridizations)
genotype
•Jemalong A17 •F83005.5
temperature
•10°C •20°C
time
•35°Cd •50°Cd •100°Cd

286/574 Experiment ME10 Characterization of a Medicago truncatula P450 monooxygenase mutant
Submitter: PLEXdb Curator
Head of Lab: Sergio Arcioni
Experiment Factors: genotype
GeneChip Type: Medicago61k
Experiment design (6 hybridizations)
genotype
•CYP716A12 mutant •wild-type

287/574 Experiment ME9 Molecular analysis of heterosis in alfalfa
Submitter: PLEXdb Curator
Head of Lab: Sergio Arcioni
Experiment Factors: genetic line
GeneChip Type: Medicago61k
Experiment design (9 hybridizations)
genetic line
•B2xB5 hybrid •B2 parent •B5 parent

288/574 Experiment ME8 Transcriptome Profiles of Medicago Stem Internodes
Submitter: PLEXdb Curator
Head of Lab: John W Gronwald
Experiment Factors: developmental stage name, genetic line
GeneChip Type: Medicago61k
Experiment design (12 hybridizations)
genetic line
•252 •1283
developmental stage name
•elongating internode •post-elongation

289/574 Experiment ME7 Effects of salt stress on Medicago truncatula seedlings
Submitter: PLEXdb Curator
Head of Lab: Daofeng Li
Experiment Factors: growth condition, time
GeneChip Type: Medicago61k
Experiment design (18 hybridizations)
growth condition
•hydroponics(200mM) •petridish(180 mM)
time
•0 hrs •1 hrs •2 hrs •5 hrs •6 hrs •10 hrs •24 hrs •48 hrs

290/574 Experiment ME6 Medicago truncatula germinated seedlings grown in Petri dishes for 3 days then carry out salt stress
Submitter: PLEXdb Curator
Head of Lab: Daofeng Li
Experiment Factors: time
GeneChip Type: Medicago61k
Experiment design (12 hybridizations)
time
•0 hrs •6 hrs •24 hrs •48 hrs

291/574 Experiment ME5 A transcript profile of Medicago truncatula 2HA tissue culture with auxin treatment
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound
GeneChip Type: Medicago61k
Experiment design (6 hybridizations)
compound
•NAA •no_NAA

292/574 Experiment ME4 Medicago truncatula seedlings grown two weeks in hydroponics media then carry out salt stress
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: time
GeneChip Type: Medicago61k
Experiment design (6 hybridizations)
time
•0 hrs •1 hrs •2 hrs •5 hrs •10 hrs •24 hrs

293/574 Experiment ME3 A transcript profile of Medicago truncatula 2HA and Jemmalong during somatic embryogenesis
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: Medicago61k
Experiment design (6 hybridizations)
genetic line
•2HA •Jemalong

294/574 Experiment ME2 A transcript profile of Medicago truncatula root meristem cells
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: cell type name
GeneChip Type: Medicago61k
Experiment design (6 hybridizations)
cell type name
•root meristem •Non-meristematic root

295/574 Experiment ME1 The Medicago truncatula Gene Expression Atlas
Submitter: Hong Lu
Head of Lab: Michael K. Udvardi
Experiment Factors: organism part name
GeneChip Type: Medicago61k
Experiment design (54 hybridizations)
organism part name
•Flower •Leaf •Nod4d •Nod10d •Nod14d •Nodule •Petiole •Pod •Root •Root-0d •Seed10d •Seed12d •Seed16d •Seed20d •Seed24d •Seed36d •Stem •VegetativeBud

tomato10k
296/574 Experiment LE22 Molecular analysis of a tomato OGDH antisense line
Submitter: PLEXdb Curator
Head of Lab: Mark Stitt
Experiment Factors: genotype
GeneChip Type: tomato10k
Experiment design (8 hybridizations)
genotype
•OGDH antisense •M82 wildtype

297/574 Experiment LE21 Microarray analysis of gene expression from different developmental stages of the tomato fruit
Submitter: PLEXdb Curator
Head of Lab: Tamas Dalmay
Experiment Factors: developmental stage name
GeneChip Type: tomato10k
Experiment design (10 hybridizations)
developmental stage name
•closed bud before flower blooming •open flower •fruit 1-3mm •fruit 5-7mm •fruit 11-14mm •mature green fruit •breaker stage fruit •3d post breaker •5d post breaker •7d post breaker

298/574 Experiment LE20 Microarray analysis of gene expression under different light conditions
Submitter: PLEXdb Curator
Head of Lab: Atsushi Fukushima
Experiment Factors: developmental stage name, light, time
GeneChip Type: tomato10k
Experiment design (20 hybridizations)
developmental stage name
•leaf •pericarp
light
•0 PPF •200 PPF •1000 PPF
time
•0 weeks •1 weeks •2 weeks

299/574 Experiment LE19 Understanding the complexity of fruit ripening by transcriptome analysis of rin mutant fruit
Submitter: PLEXdb Curator
Head of Lab: Arun K. Sharma
Experiment Factors: developmental stage name, genotype
GeneChip Type: tomato10k
Experiment design (18 hybridizations)
genotype
•wild type •rin mutant
developmental stage name
•immature green fruit •breaker fruit •red-ripe fruit

300/574 Experiment LE18 Microarray analysis of gene expression induced by Phytophthora infestans in tomato leaves
Submitter: PLEXdb Curator
Head of Lab: Muna Sultan
Experiment Factors: pathogen inoculation
GeneChip Type: tomato10k
Experiment design (7 hybridizations)
pathogen inoculation
•Healthy •Diseased

301/574 Experiment LE17 Genome wide expression analysis of psaA and psbA tobacco mutant plants.
Submitter: PLEXdb Curator
Head of Lab: V. Siva Reddy
Experiment Factors: genotype
GeneChip Type: tomato10k
Experiment design (6 hybridizations)
genotype
•psaA mutant •psbA mutant •normal

302/574 Experiment LE16 A tomato fruit RNA extraction method that isolates mRNAs encoding secreted and endomembrane associated proteins
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: protocol
GeneChip Type: tomato10k
Experiment design (3 hybridizations)
protocol
•RNA Extraction Ex1 •RNA Extraction Ex2 •RNA Extraction Ex2-pellet

303/574 Experiment LE15 Tomato fruit wound inoculation by C. coccodes and ammonium treated
Submitter: PLEXdb Curator
Head of Lab: Robert Fluhr
Experiment Factors: pathogen inoculation
GeneChip Type: tomato10k
Experiment design (8 hybridizations)
pathogen inoculation
•colletotrichum coccodes •control •ammonium •PBS control

304/574 Experiment LE14 Transcriptomic and metabolic responses of mycorrhizal roots to nitrogen patches under field conditions
Submitter: PLEXdb Curator
Head of Lab: Daniel P Schachtman
Experiment Factors: genotype, nutrient
GeneChip Type: tomato10k
Experiment design (30 hybridizations)
genotype
•wildtype •mutant(rmc)
nutrient
•control •low nitrogen •high nitrogen

305/574 Experiment LE13 Expression data in response to abiotic stresses in tomato at flowering stage (Heat Stress)
Submitter: PLEXdb Curator
Head of Lab: Narendra K. Singh
Experiment Factors: genotype, stress condition
GeneChip Type: tomato10k
Experiment design (12 hybridizations)
genotype
•heat suseptible •heat resistant
stress condition
•control •heat stressed

306/574 Experiment LE12 Expression data in response to abiotic stresses in tomato at flowering stage (Drought Stress)
Submitter: PLEXdb Curator
Head of Lab: Narendra K. Singh
Experiment Factors: genotype, stress condition
GeneChip Type: tomato10k
Experiment design (12 hybridizations)
genotype
•drought suseptible •drought resistant
stress condition
•control •water stressed

307/574 Experiment LE11 Expression data of fruits in the wildtype and ORR tomato plants
Submitter: PLEXdb Curator
Head of Lab: Asaph Aharoni
Experiment Factors: genotype
GeneChip Type: tomato10k
Experiment design (12 hybridizations)
genotype
•wildtype •homozygous Orr •heterozygous Orr •Orr excision line

308/574 Experiment LE10 Tomato root transcriptome response to a nitrogen-enriched soil patch
Submitter: PLEXdb Curator
Head of Lab: Daniel P Schachtman
Experiment Factors: nutrient
GeneChip Type: tomato10k
Experiment design (9 hybridizations)
nutrient
•water_control •low Nitrogen •high Nitrogen

309/574 Experiment LE9 Transcript profiling of tomato mutants producing anthocyanins in the fruit
Submitter: PLEXdb Curator
Head of Lab: Pierdomenico Perata
Experiment Factors: genotype
GeneChip Type: tomato10k
Experiment design (8 hybridizations)
genotype
•wild type •Aft mutant •atv mutant •Aft atv double mutant

310/574 Experiment LE8 Expression data from PSARK::IPT Nicotiana and wildtype plants
Submitter: PLEXdb Curator
Head of Lab: Eduardo Blumwald
Experiment Factors: genetic line, stress condition
GeneChip Type: tomato10k
Experiment design (12 hybridizations)
genetic line
•wildtype •transgenic PSARK::IPT
stress condition
•well-watered •water stressed

311/574 Experiment LE7 Expression data from various tomato plant tissues
Submitter: PLEXdb Curator
Head of Lab: Koh Aoki
Experiment Factors: tissue type name
GeneChip Type: tomato10k
Experiment design (67 hybridizations)
tissue type name
•Micro-Tom root •Micro-Tom hypocotyl •Micro-Tom cotyledon •Micro-Tom 3rd leaves 3wk •Micro-Tom all leaves 3wk •Micro-Tom all leaves 5wk •Micro-Tom flesh mature green fruit •Micro-Tom flesh yellow fruit •Micro-Tom flesh orange fruit •Micro-Tom flesh red fruit •Micro-Tom peel mature green fruit •Micro-Tom peel yellow fruit •Micro-Tom peel orange fruit •Micro-Tom peel red fruit •Aft flesh mature green fruit •Aft flesh red fruit •Aft peel of mature green fruit •Aft peel of red fruit •Line27859 flesh mature green fruit •Line27859 flesh red fruit •Line27859 peel mature green fruit •Line27859 peel red fruit •Momotaro8 flesh red fruit •Momotaro8 peel red fruit

312/574 Experiment LE6 tomato salt response
Submitter: PLEXdb Curator
Head of Lab: Xuejun Hua
Experiment Factors: strain, treatment
GeneChip Type: tomato10k
Experiment design (12 hybridizations)
treatment
•unstressed •salt stressed
strain
•tolerant P12365967 •moneymaker

313/574 Experiment LE5 Gene regulation in parthenocarpic tomato fruit
Submitter: PLEXdb Curator
Head of Lab: Abhaya M Dandekar
Experiment Factors: genetic line
GeneChip Type: tomato10k
Experiment design (17 hybridizations)
genetic line
•wildtype with seeds •wildtype seeds removed •INO-laaM •DefH9-laaM •INO-RolB •DefH9-RolB

314/574 Experiment LE3 Expression data of tomato fruit responses to Botrytis cinerea
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: fruit stage, pathogen infection
GeneChip Type: tomato10k
Experiment design (18 hybridizations)
fruit stage
•mature green •red ripe
pathogen infection
•healthy •mock inoculated •B. Cinerea inoculated

315/574 Experiment LE2 Tomato wild type, vector control and transgenic lines expressing InsP 5-ptase: mature fruits, root tips, and leaves
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name, transgenic
GeneChip Type: tomato10k
Experiment design (40 hybridizations)
organism part name
•fruits •leaves •root_tips
transgenic
•Wild type •Vector control •Transgen. Line N6 •Transgen. Line N7

316/574 Experiment LE1 Trafficking of mRNA from tomato to dodder
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: parasite
GeneChip Type: tomato10k
Experiment design (10 hybridizations)
parasite
•Tomato host tissue •Dodder_Tomato •Dodder_Arabidopsis(control) •Dodder_Tobacco(control) •Dodder_Pumpkin(control)

Cotton
317/574 Experiment GO12 Understanding the molecular events underpinning cultivar differences in physiological performance and heat tolerance
Submitter: Iain W Wilson
Head of Lab: Michael P. Bange
Experiment Factors: cultivar, temperature
GeneChip Type: Cotton
Experiment design (12 hybridizations)
temperature
•32 C •42
cultivar
•Sicala 45 •Sicot 53

318/574 Experiment GO11 Expression data from 0dpa ovules of GhHD-1 silenced and over-expression transgenic cotton lines
Submitter: PLEXdb Curator
Head of Lab: Elizabeth Dennis
Experiment Factors: genetic line
GeneChip Type: Cotton
Experiment design (7 hybridizations)
genetic line
•wild type •GhHD-1 silenced •GhHD-1 over-expression

319/574 Experiment GO10 evolution of genotypes and differences - affy_gnp07_regeneome_cotton
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: age, genetic line
GeneChip Type: Cotton
Experiment design (24 hybridizations)
genetic line
•1a •b2 •Irma
age
•21 days •64 days

320/574 Experiment GO9 Global gene expression analysis of cotton (Gossypium hirsutum L.) under drought stress in leaf tissue and during fibre development stages.
Submitter: PLEXdb Curator
Head of Lab: Vanga Siva Reddy
Experiment Factors: developmental stage name, stress condition
GeneChip Type: Cotton
Experiment design (30 hybridizations)
stress condition
•control •drought
developmental stage name
•leaf •0 dpa •5 dpa •10 dpa •20 dpa

321/574 Experiment GO8 Global gene expression analysis of cotton (Gossypium hirsutum L.) under drought stress during fibre development stages.
Submitter: PLEXdb Curator
Head of Lab: Vanga Siva Reddy
Experiment Factors: developmental stage name, stress condition
GeneChip Type: Cotton
Experiment design (24 hybridizations)
stress condition
•control •drought
developmental stage name
•0 dpa •5 dpa •10 dpa •20 dpa

322/574 Experiment GO7 Global gene expression analysis of cotton (Gossypium hirsutum L.) under drought stress in leaf tissue.
Submitter: PLEXdb Curator
Head of Lab: Vanga Siva Reddy
Experiment Factors: stress condition
GeneChip Type: Cotton
Experiment design (6 hybridizations)
stress condition
•control •drought

323/574 Experiment GO6 Affymetrix Cotton Genome array expression data of cotton fiber at different developmental stages from different varieties of Gossypium hirsutum
Submitter: PLEXdb Curator
Head of Lab: Samir V Sawant
Experiment Factors: developmental stage name, genotype
GeneChip Type: Cotton
Experiment design (89 hybridizations)
genotype
•JKC 725 •JKC 703 •JKC 777 •JKC 783 •JKC 737
developmental stage name
•0dpa •6dpa •9dpa •12dpa •19dpa •25dpa

324/574 Experiment GO5 Affymetrix Cotton Genome array expression data of root tissue of Gossypium herbaceum under drought stress and watered condition
Submitter: PLEXdb Curator
Head of Lab: Samir V Sawant
Experiment Factors: genotype, stress condition
GeneChip Type: Cotton
Experiment design (12 hybridizations)
genotype
•sensitive •tolerant
stress condition
•water •drought

325/574 Experiment GO4 Transcription profiling of One month old Gossypium herbaceum plant leaf during drought and watered condition
Submitter: PLEXdb Curator
Head of Lab: Samir Sawant
Experiment Factors: genotype, stress condition
GeneChip Type: Cotton
Experiment design (12 hybridizations)
genotype
•Tolerant •Sensitive
stress condition
•Drought •Water

326/574 Experiment GO3 Identification of differentially expressed genes associated with semigamy in Pima cotton
Submitter: PLEXdb Curator
Head of Lab: Jinfa Zhang
Experiment Factors: genotype, organism part name
GeneChip Type: Cotton
Experiment design (4 hybridizations)
genotype
•57-4 •PS-1
organism part name
•ovules •anthers

327/574 Experiment GO2 Gene expression profile from field-grown drought-stressed cotton
Submitter: PLEXdb Curator
Head of Lab: Jing Zhang
Experiment Factors: stress condition
GeneChip Type: Cotton
Experiment design (2 hybridizations)
stress condition
•control •drought-stressed

328/574 Experiment GO1 Global gene expression analysis of waterlogging stressed Cotton root and leaf tissue
Submitter: PLEXdb Curator
Head of Lab: Iain W. Wilson
Experiment Factors: stress condition, tissue type name
GeneChip Type: Cotton
Experiment design (8 hybridizations)
stress condition
•flooded •control
tissue type name
•root •leaf

Soybean
329/574 Experiment GM53 Transcriptome during autoregulation of mycorrhization in soybean
Submitter: Sara Schaarschmidt
Head of Lab: Dr. Florian Wagner
Experiment Factors: genotype, inoculation, tissue type name
GeneChip Type: Soybean
Experiment design (30 hybridizations)
genotype
•Bragg wt •nts1007
inoculation
•minus •plus
tissue type name
•root-parts AB •root-part A (myc) •root-part B (non-myc) •shoot

330/574 Experiment GM52 Expression data from salinity treated and control soybean
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: stress condition
GeneChip Type: Soybean
Experiment design (2 hybridizations)
stress condition
•salinity •control

331/574 Experiment GM51 Response of Rpp4-silenced plants to soybean rust
Submitter: Steve Whitham
Head of Lab: Michelle Graham
Experiment Factors: treatment
GeneChip Type: Soybean
Experiment design (5 hybridizations)
treatment
•BPMV-LRR •BPMV empty vector

332/574 Experiment GM50 The effects of bud removal on soybean leaf gene expression.
Submitter: PLEXdb Curator
Head of Lab: Markus Lange
Experiment Factors: time
GeneChip Type: Soybean
Experiment design (22 hybridizations)
time
•control 0 days •control 15 days •detip 15 days •control 20 days •detip-retip 20 days •control 30 days •detip-retip 30 days

333/574 Experiment GM49 Comparison of RNA expression in paravienal mesophyll (PVM) and palisade parenchyma (PP) cells.
Submitter: PLEXdb Curator
Head of Lab: Markus Lange
Experiment Factors: tissue type name
GeneChip Type: Soybean
Experiment design (6 hybridizations)
tissue type name
•PVM cells •PP cells

334/574 Experiment GM47 Transcriptional response to soybean aphid infestation in susceptible and resistant soybean plants
Submitter: Matthew E Studham
Head of Lab: Gustavo MacIntosh
Experiment Factors: cultivar, insect infestation, time
GeneChip Type: Soybean
Experiment design (24 hybridizations)
insect infestation
•Soybean aphids •No soybean aphids
cultivar
•Susceptible SD01-76R •Resistant LD05-16060
time
•1 days •7 days

335/574 Experiment GM46 Transcript profiling of soybean msh1 RNAi transgenic lines
Submitter: PLEXdb Curator
Head of Lab: Sally Mackenzie
Experiment Factors: genotype
GeneChip Type: Soybean
Experiment design (10 hybridizations)
genotype
•wild type •msh1 RNAi variegation •msh1 RNAi stunted

336/574 Experiment GM43 Expression data from the seed coats of black (iRT) and brown (irT) soybean variant for alleles of the R locus
Submitter: PLEXdb Curator
Head of Lab: Nikola Kovinich
Experiment Factors: genotype
GeneChip Type: Soybean
Experiment design (6 hybridizations)
genotype
•Black Seed Coat(iRT) •Brown Seed Coat(irT)

337/574 Experiment GM41 Expression data of Soybean root apical meristem and leaf
Submitter: PLEXdb Curator
Head of Lab: Prem Bhalla
Experiment Factors: tissue type name
GeneChip Type: Soybean
Experiment design (5 hybridizations)
tissue type name
•root apical meristem •leaf non-meristematic

338/574 Experiment GM40 Characterization of gene expression profile in developing soybean seeds by DNA microarray
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name
GeneChip Type: Soybean
Experiment design (8 hybridizations)
developmental stage name
•bean 2mm •bean 5mm •pod elongation •fully grown

339/574 Experiment GM39 Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max [Soy]
Submitter: PLEXdb Curator
Head of Lab: David J Weston
Experiment Factors: temperature
GeneChip Type: Soybean
Experiment design (16 hybridizations)
temperature
•baseline •optimum •20% inhibition •30% inhibition

340/574 Experiment GM38 Soybean root hair cell response to Bradyrhizobium japonicum inoculation
Submitter: PLEXdb Curator
Head of Lab: Gary Stacey
Experiment Factors: pathogen inoculation, time
GeneChip Type: Soybean
Experiment design (42 hybridizations)
pathogen inoculation
•B. japonicum •Mock
time
•6 hai •12 hai •18 hai •24 hai •36 hai •48 hai

341/574 Experiment GM37 Molecular characterization of the Rpp4 resistance response
Submitter: Steve Whitham
Head of Lab: Steve Whitham
Experiment Factors: genotype, pathogen inoculation, time
GeneChip Type: Soybean
Experiment design (72 hybridizations)
genotype
•Williams •PI459025B
pathogen inoculation
•Mock •Hawaii 94-1
time
•12 hai •24 hai •72 hai •144 hai •216 hai •288 hai

342/574 Experiment GM36 Molecular characterization of the incompatible and compatible interaction of soybean rust disease in Rpp3-containing PI462312 line
Submitter: Steve Whitham
Head of Lab: Whitham / Baum
Experiment Factors: pathogen isolates, time
GeneChip Type: Soybean
Experiment design (54 hybridizations)
pathogen isolates
•Mock •Taiwan 80-2 (vir) •Hawaii 94-1 (avir)
time
•12 hai •24 hai •72 hai •144 hai •216 hai •288 hai

343/574 Experiment GM35 Expression data of Soybean (Glycine max) roots from different iron treatments.
Submitter: PLEXdb Curator
Head of Lab: Robert M. Stupar
Experiment Factors: genetic line, stress condition
GeneChip Type: Soybean
Experiment design (24 hybridizations)
genetic line
•IsoClark •Clark
stress condition
•Fe limited •Fe sufficient •Fe recovery •Fe sustained

344/574 Experiment GM34 Expression of the Stress-Related Genes for Glutathione S-Transferase and Ascorbate Peroxidase in the Most-Glycinin-Deficient Soybean Cultivar Tousan205 during Seed Maturation.
Submitter: PLEXdb Curator
Head of Lab: Tomoyo Narikawa
Experiment Factors: cultivar, developmental stage name
GeneChip Type: Soybean
Experiment design (8 hybridizations)
cultivar
•Nanahomare •Tamahomare
developmental stage name
•Bean5mm •Full Grown

345/574 Experiment GM33 Alterations in soybean gene expression profile after foliar application of lipo-chitooligosaccharide (LCO) from Bradyrhizobium japonicum under sub-optimal temperature
Submitter: PLEXdb Curator
Head of Lab: Donald L. Smith
Experiment Factors: compound, time
GeneChip Type: Soybean
Experiment design (12 hybridizations)
compound
•control •LCO
time
•0 hrs •48 hrs

346/574 Experiment GM32 Alkaline-stress response in Glycine soja leaf identifies specific transcription factors and ABA-mediated signaling factors
Submitter: PLEXdb Curator
Head of Lab: Yanming Zhu
Experiment Factors: time
GeneChip Type: Soybean
Experiment design (14 hybridizations)
time
•0(control) hrs •0.5 hrs •1 hrs •3 hrs •6 hrs •12 hrs •24 hrs

347/574 Experiment GM31 Circadian clock controlled gene expression in soybean seeds
Submitter: PLEXdb Curator
Head of Lab: Karen A Hudson
Experiment Factors: time
GeneChip Type: Soybean
Experiment design (26 hybridizations)
time
•24 hrs •28 hrs •32 hrs •36 hrs •40 hrs •44 hrs •48 hrs •52 hrs •56 hrs •60 hrs •64 hrs •68 hrs •72 hrs

348/574 Experiment GM30 Transcript profiling of common bean using the Soybean Genome Array: optimizing analysis by masking biased probes
Submitter: PLEXdb Curator
Head of Lab: Sam Yang
Experiment Factors: organism part name, species
GeneChip Type: Soybean
Experiment design (18 hybridizations)
species
•soybean •common bean
organism part name
•leaf •nodule •root

349/574 Experiment GM29 Gene expression profiling in soybean under aluminum stress: mechanisms of magnesium amelioration of aluminum toxicity
Submitter: PLEXdb Curator
Head of Lab: Khairy M. Soliman
Experiment Factors: compound, genotype, time
GeneChip Type: Soybean
Experiment design (24 hybridizations)
genotype
•PI416937 •Young
compound
•Aluminum •Aluminum+Magnesium
time
•12 hrs •72 hrs

350/574 Experiment GM28 Global transcriptome profiling of wild soybean (Glycine soja) roots under NaHCO3 treatment
Submitter: PLEXdb Curator
Head of Lab: Yanming Zhu and Dianjing Guo
Experiment Factors: time
GeneChip Type: Soybean
Experiment design (14 hybridizations)
time
•0(control) hrs •0.5 hrs •1 hrs •3 hrs •6 hrs •12 hrs •24 hrs

351/574 Experiment GM27 Gene expression in Phytophthora sojae mycelia, germinating zoospores, and during infection of soybean hypocotyls
Submitter: PLEXdb Curator
Head of Lab: Mark Gijzen
Experiment Factors: tissue type name
GeneChip Type: Soybean
Experiment design (28 hybridizations)
tissue type name
•Germinating zoospores 0h •Germinating zoospores 2h •Germinating zoospores 6h •Mycelia H&Smedia •Mycelia V8media •Infected hypocotyls 6h •Infected hypocotyls 12h •Infected hypocotyls 24h •Infected hypocotyls 48h

352/574 Experiment GM26 Analysis of Iron Deficiency in Soybean Leaf Tissue
Submitter: PLEXdb Curator
Head of Lab: Randy Shoemaker
Experiment Factors: genotype, stress condition
GeneChip Type: Soybean
Experiment design (11 hybridizations)
genotype
•Clark •IsoClark
stress condition
•Iron Sufficient •Iron Defficient

353/574 Experiment GM25 GmMPK4 is a negative regulator of SA-mediated defense response
Submitter: Jianzhong Liu
Head of Lab: Steve Whitham
Experiment Factors: genotype
GeneChip Type: Soybean
Experiment design (8 hybridizations)
genotype
•Williams 82 •GmMPK4-silenced Williams 82

354/574 Experiment GM24 Transcriptional profiling of root-knot nematode induced feeding sites in cowpea (Vigna unguiculata L. Walp)
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, pathogen infection, time
GeneChip Type: Soybean
Experiment design (20 hybridizations)
genotype
•CB46(resistant) •null-Rk(susceptible)
pathogen infection
•nematode infected •uninfected
time
•3 dpi •9 dpi

355/574 Experiment GM23 Storage Protein Suppression in Transgenic Soybean Cotyledons
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: Soybean
Experiment design (6 hybridizations)
genetic line
•WT_non-transgenic •RNAi_transgenic

356/574 Experiment GM22 Suppression of oleosin in soybean cotyledon
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: Soybean
Experiment design (6 hybridizations)
genetic line
•wildtype •transgenic RNAiOleosin

357/574 Experiment GM21 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: tissue type name
GeneChip Type: Soybean
Experiment design (5 hybridizations)
tissue type name
•mature pollen •sporophytic tissue

358/574 Experiment GM20 Genome-wide analysis of gene expression in the soybean shoot apical meristem
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: tissue type name
GeneChip Type: Soybean
Experiment design (6 hybridizations)
tissue type name
•non-apical meristem •shoot apical meristem •axillary meristem

359/574 Experiment GM19 Detection and Validation of Single Feature Polymorphisms in Cowpea using a Soybean Genome Array
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, stress condition
GeneChip Type: Soybean
Experiment design (8 hybridizations)
genotype
•CB46 •503-1
stress condition
•drought stressed •unstressed

360/574 Experiment GM18 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: photoperiod
GeneChip Type: Soybean
Experiment design (10 hybridizations)
photoperiod
•0SD •1SD •2SD •4SD •6SD

361/574 Experiment GM17 Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: treatment
GeneChip Type: Soybean
Experiment design (6 hybridizations)
treatment
•LCO •Water(control)

362/574 Experiment GM16 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: cultivar
GeneChip Type: Soybean
Experiment design (25 hybridizations)
cultivar
•2601R •Bayfield •Mandarin •PS46R •S03W4

363/574 Experiment GM15 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen isolates, time
GeneChip Type: Soybean
Experiment design (27 hybridizations)
pathogen isolates
•HW94-1(resistant) •TW72-1(susceptible) •mock
time
•0 hai •6 hai •12 hai •24 hai •48 hai

364/574 Experiment GM14 Expression data from SRB embryo regions at the globular stage
Submitter: PLEXdb Curator
Head of Lab: Bob Goldberg
Experiment Factors: tissue type name
GeneChip Type: Soybean
Experiment design (4 hybridizations)
tissue type name
•embryo proper •suspensor

365/574 Experiment GM13 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: cultivar, time, treatment
GeneChip Type: Soybean
Experiment design (128 hybridizations)
cultivar
•ATHOW •CONRAD •GENERAL •WILLIAMS •OX20-8 •V716370 •P1291327 •SLOAN
time
•3 dpi •5 dpi
treatment
•mock •inoculated

366/574 Experiment GM12 Gene expression analysis in soybean with respect to Phakopsora pachyrhizi at V2 growth stage
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen infection
GeneChip Type: Soybean
Experiment design (6 hybridizations)
pathogen infection
•control •rust inoculated

367/574 Experiment GM11 Soy LGI Protein NILs, seed fill
Submitter: Yung-Tsi Bolon
Head of Lab: Carroll Vance
Experiment Factors: genotype, time
GeneChip Type: Soybean
Experiment design (24 hybridizations)
genotype
•LoProt •HiProt
time
•25-50 •>50-100 •>100-200 •>200-300

368/574 Experiment GM10 Genomics of Soybean Seed Development Using Laser Capture Microdissection (Submitted by Julie Dickerson, PLEXdb Team)
Submitter: Julie A Dickerson
Head of Lab: Bob Goldberg
Experiment Factors: developmental stage name, tissue type name
GeneChip Type: Soybean
Experiment design (69 hybridizations)
developmental stage name
•Globular Stage Embryo •Heart-Stage Embryo •Cotyledon-stage Embryo
tissue type name
•Whole Seed •Young Trifolate Leaf •Embryo proper (LCM) •Endosperm (LCM) •Endothelium (LCM) •Epidermis (LCM) •Hilum (LCM) •Inner integument (LCM) •Outer integument (LCM) •Suspensor (LCM)

369/574 Experiment GM3 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
Submitter: Sucheta Tripathy
Head of Lab: Bruno Sobral
Experiment Factors: genotype, infection site, time, treated or untreated
GeneChip Type: Soybean
Experiment design (160 hybridizations)
genotype
•V71-370 •CONRAD •SLOAN •VP-RIL9
treated or untreated
•P.sojae inoculated •mock inoculated
infection site
•above and below infection •above infection •below infection
time
•24 hai •48 hai •72 hai •120 hai

370/574 Experiment GM2 Comprehensive molecular characterization of the soybean rust disease [Embrapa-Soja - Iowa State Univ; 2005]
Submitter: Martijn van de Mortel
Head of Lab: Baum / Whitham
Experiment Factors: genotype, time, Treated or untreated
GeneChip Type: Soybean
Experiment design (120 hybridizations)
genotype
•PI230970 •Embrapa48
time
•006 •012 •018 •024 •036 •048 •072 •096 •120 •168
Treated or untreated
•SBR •Mock

Fusarium
371/574 Experiment FG21 Transcript Expression Profiles of F. graminearum During the Infection of Wheat and Rice
Submitter: Jon R Menke
Head of Lab: Corby Kistler
Experiment Factors: species, time
GeneChip Type: Fusarium
Experiment design (18 hybridizations)
species
•Wheat •Rice
time
•48 hai •96 hai •192 hai

372/574 Experiment FG19 Stage-specific expression patterns of Fusarium graminearum growing inside wheat coleoptiles with laser microdissection
Submitter: Wei-Hua Tang
Head of Lab: Wei-Hua Tang
Experiment Factors: time
GeneChip Type: Fusarium
Experiment design (17 hybridizations)
time
•0 hpi •16 hpi •40 hpi •64 hpi •240 hpi •72 hrs

373/574 Experiment FG18 Trichothecene synthesis in a Fusarium graminearum Fgp1 mutant.
Submitter: Harold Corby Kistler
Head of Lab: H. Corby Kistler
Experiment Factors: genotype
GeneChip Type: Fusarium
Experiment design (6 hybridizations)
genotype
•Wild type •fgp1 mutant

374/574 Experiment FG16 Fusarium graminearum gene expression in wheat stems during infection
Submitter: Heather E Hallen
Head of Lab: Frances Trail
Experiment Factors: developmental stage name
GeneChip Type: Fusarium
Experiment design (12 hybridizations)
developmental stage name
•IF - vegetative hyphae •RW - wide dikaryotic hyphae •SW - perithecial initials •YP - young perithecia

375/574 Experiment FG15 F. graminearum gene expression during wheat head blight
Submitter: Erik Lysøe
Head of Lab: H. Corby Kistler (CDL)
Experiment Factors: time
GeneChip Type: Fusarium
Experiment design (21 hybridizations)
time
•0 hrs •24 hrs •48 hrs •72 hrs •96 hrs •144 hrs •192 hrs

376/574 Experiment FG14 DON induction media
Submitter: Donald Max Gardiner
Head of Lab: John Manners
Experiment Factors: growth condition
GeneChip Type: Fusarium
Experiment design (8 hybridizations)
growth condition
•agmatine •glutamine

377/574 Experiment FG13 The transcription factor FgStuAp influences spore development, pathogenicity and secondary metabolism in Fusarium graminearum
Submitter: Erik Lysøe
Head of Lab: Corby Kistler (USDA), hckist@umn.edu
Experiment Factors: growth condition, strain
GeneChip Type: Fusarium
Experiment design (18 hybridizations)
strain
•PH-1 •deltaFgStuA
growth condition
•CMC •Wheat •SecMet

378/574 Experiment FG12 Fusarium graminearum gene expression during crown rot of wheat
Submitter: Amber Elise Stephens
Head of Lab: Dr John Manners
Experiment Factors: time
GeneChip Type: Fusarium
Experiment design (15 hybridizations)
time
•2 dpi •14 dpi •35 dpi •mycelia cultured

379/574 Experiment FG11 Gene Regulation by Fusarium Transcription Factors Tri6 and Tri10
Submitter: Harold Corby Kistler
Head of Lab: H. Corby Kistler
Experiment Factors: strain
GeneChip Type: Fusarium
Experiment design (9 hybridizations)
strain
•PH-1 wildtype •PH-1 tri6 deletion •PH-1 tri10 deletion

380/574 Experiment FG10 Response to trichodiene treatment in Fusarium graminearum
Submitter: Harold Corby Kistler
Head of Lab: H. Corby Kistler
Experiment Factors: compound
GeneChip Type: Fusarium
Experiment design (6 hybridizations)
compound
•250 µM trichodiene •no trichodiene

381/574 Experiment FG7 Fusarium gene expression profiles during conidia germination stages
Submitter: Kye-Yong Seong
Head of Lab: Corby Kistler
Experiment Factors: time
GeneChip Type: Fusarium
Experiment design (12 hybridizations)
time
•0 •2 •8 •24

382/574 Experiment FG6 Transcript detection during in vitro sexual development of Fusarium Cch1 calcium channel deletion mutant using Fusariuma Affy GeneChips
Submitter: Heather E Hallen
Experiment Factors: time
GeneChip Type: Fusarium
Experiment design (9 hybridizations)
time
•0H •96H •144H

383/574 Experiment FG5 Fusarium transcript detection during in vitro sexual development using Fusarium Affy GeneChips
Submitter: Heather E Hallen
Experiment Factors: time
GeneChip Type: Fusarium
Experiment design (23 hybridizations)
time
•0 hrs •24 hrs •48 hrs •72 hrs •96 hrs •144 hrs

384/574 Experiment FG4 Fusarium/Barley RNA dilution
Submitter: Kye-Yong Seong
Experiment Factors: dilution
GeneChip Type: Fusarium
Experiment design (5 hybridizations)
dilution
•original PH1 •1/10 •1/100 •1/1000 •1/10000

385/574 Experiment FG3 Cross-species hybridization
Submitter: Kye-Yong Seong
Experiment Factors: cross-species comparison
GeneChip Type: Fusarium
Experiment design (14 hybridizations)
cross-species comparison
•F. boothii •F. graminearum •F. asiaticum •F. pseudograminearum •F. oxysporum •F. verticillioides •F. culmorum

386/574 Experiment FG2 Expression Profiles in Carbon and Nitrogen Starvation Conditions
Submitter: Kye-Yong Seong
Experiment Factors: growth condition
GeneChip Type: Fusarium
Experiment design (9 hybridizations)
growth condition
•Complete Media •Carbon Starvation •Nitrogen Starvation

387/574 Experiment FG1 Fusarium transcript detection on Morex barley spikes using Fusarium Affy GeneChips
Submitter: Seungho Cho
Head of Lab: Muehlbauer
Experiment Factors: developmental stage
GeneChip Type: Fusarium
Experiment design (18 hybridizations)
developmental stage
•water control •24 hours •48 hours •72 hours •96 hours •144 hours

Citrus
388/574 Experiment CT11 Global changes in gene expression of grapefruit peel tissue in response to the yeast biocontrol agent M. fructicola
Submitter: PLEXdb Curator
Head of Lab: Metsada Pasmanik-Chor
Experiment Factors: treatment
GeneChip Type: Citrus
Experiment design (6 hybridizations)
treatment
•control •M. fructicola

389/574 Experiment CT10 Transcriptional analysis of epithelial cells in grapefruit peel
Submitter: PLEXdb Curator
Head of Lab: Bernd Markus Lange
Experiment Factors: cell type name, fruit stage
GeneChip Type: Citrus
Experiment design (12 hybridizations)
cell type name
•epithelial cell •parenchyma cell
fruit stage
•28mm •41mm

390/574 Experiment CT9 Gene expression analysis in pre- and early post-anthesis stage ovules of Citrus sinensis
Submitter: PLEXdb Curator
Head of Lab: Shripad R. Bhat
Experiment Factors: cultivar, tissue type name
GeneChip Type: Citrus
Experiment design (21 hybridizations)
cultivar
•Vaniglia Sanguigno •Temple
tissue type name
•ovule pre anthesis •ovule post anthesis •ovule inital fruit set stage •leaf

391/574 Experiment CT8 Comparative analysis of stylar canal cells transcriptome in clementine mandarin (Citrus clementina)
Submitter: PLEXdb Curator
Head of Lab: Alessandra Gentile
Experiment Factors: genotype
GeneChip Type: Citrus
Experiment design (6 hybridizations)
genotype
•self-incompatible Comune •self compatible Monreal

392/574 Experiment CT7 Gene expression in Citrus sinensis (L.) Osbeck following infection with the bacterial pathogen Candidatus Liberibacter asiaticus causing Huanglongbing in Florida
Submitter: PLEXdb Curator
Head of Lab: Ute Albrecht
Experiment Factors: pathogen infection, time
GeneChip Type: Citrus
Experiment design (10 hybridizations)
pathogen infection
•infected •healthy
time
•5-9 wai •13-17 wai

393/574 Experiment CT6 Transcriptional response of susceptible and tolerant citrus to infection with Candidatus Liberibacter asiaticus
Submitter: PLEXdb Curator
Head of Lab: Ute Albrecht
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: Citrus
Experiment design (12 hybridizations)
genotype
•Cleopatra •US-897
pathogen inoculation
•control •inoculated

394/574 Experiment CT5 Expression data of sweet orange in response to Candidatus Liberibacter asiaticus infection at advanced stage
Submitter: PLEXdb Curator
Head of Lab: Fred G. Gmitter
Experiment Factors: pathogen inoculation
GeneChip Type: Citrus
Experiment design (6 hybridizations)
pathogen inoculation
•mock •inoculated

395/574 Experiment CT4 Expression data from postharvest Ponkan (Citrus reticulata Blanco) fruit under cold storage
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: Cold Storage
GeneChip Type: Citrus
Experiment design (4 hybridizations)
Cold Storage
•0 day •30 day •60 day •90 day

396/574 Experiment CT3 Transcriptional Analysis of Rind Separation in Mandarin Oranges
Submitter: PLEXdb Curator
Head of Lab: Timothy J Close
Experiment Factors: developmental stage name, genetic line
GeneChip Type: Citrus
Experiment design (16 hybridizations)
genetic line
•Clementine Nules •Lee X Nova
developmental stage name
•before rind separation •at rind separation •after rind separation

397/574 Experiment CT2 Transcriptional analysis of the sweet orange interaction with the citrus canker pathogens
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen infection, time
GeneChip Type: Citrus
Experiment design (11 hybridizations)
pathogen infection
•Xac •Xaa •mock
time
•6 habi •48 habi

398/574 Experiment CT1 Lemon_acidity
Submitter: Mikeal Roose
Head of Lab: Mikeal L. Roose
Experiment Factors: developmental stage, genotype
GeneChip Type: Citrus
Experiment design (18 hybridizations)
genotype
•Faris sweet lemon •Faris acid lemon •Frost Lisbon lemon
developmental stage
•PO:0007009 FF.01 fruit size 30%, •PO:0007050 FR.03 late stage of fruit ripening,

Brachy
399/574 Experiment BD3 Brachy leaf, root, and stem
Submitter: Samuel P Hazen
Head of Lab: Sam Hazen
Experiment Factors: tissue type name
GeneChip Type: Brachy
Experiment design (9 hybridizations)
tissue type name
•leaf •root •stem

400/574 Experiment BD2 Brachypodium Abiotic Stress Gene Expression
Submitter: jessica robyn murray
Head of Lab: Todd Mockler
Experiment Factors: time, treatment
GeneChip Type: Brachy
Experiment design (119 hybridizations)
treatment
•Salt •Salt Control •Drought •Drought Control •High Light •Cold •Heat •Control (High Light, Cold, Heat)
time
•1 hrs •2 hrs •5 hrs •10 hrs •24 hrs

401/574 Experiment BD1 Brachypodium Diurnal/Circadian Gene Expression
Submitter: jessica robyn murray
Head of Lab: Todd Mockler
Experiment Factors: diurnalcourse, growth condition, time
GeneChip Type: Brachy
Experiment design (78 hybridizations)
growth condition
•Diurnal •Circadian_LLHH
diurnalcourse
•LDHH •LDHC •LLHC
time
•0 hrs •4 hrs •8 hrs •12 hrs •16 hrs •20 hrs •24 hrs •28 hrs •32 hrs •36 hrs •40 hrs •44 hrs •48 hrs

Barley1
402/574 Experiment BB108 Expression analysis of gene silenced barley to identify the function of a novel LRR-RLK (leucine-rich repeat receptor-like kinase)
Submitter: David L Parrott
Head of Lab: Andreas M Fischer
Experiment Factors: treatment
GeneChip Type: Barley1
Experiment design (12 hybridizations)
treatment
•Untreated Control •Empty Virus (no inserted plant sequences) •Rbaal VIGS •Co-silencing (Rbaal + PDS)

403/574 Experiment BB107 Steptoe barley (Hordeum vulgare) gene expression is altered due to exposure to different cereal aphid genotypes (Sitobion avenae)
Submitter: Sharon E Zytynska
Head of Lab: Dr Richard F Preziosi
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (14 hybridizations)
genotype
•Aphid CLO7 •Aphid DAV95 •Aphid H1 •Aphid HF92a •No Aphid

404/574 Experiment BB106 Barley Germination and Seedling Growth Time Course
Submitter: PLEXdb Curator
Head of Lab: Yong-qiang An
Experiment Factors: developmental stage name
GeneChip Type: Barley1
Experiment design (18 hybridizations)
developmental stage name
•stage S0 •stage S1 •stage S2 •stage S3 •stage S4 •stage S5

405/574 Experiment BB105 Transcriptome analysis of the barley fast neutron mutants nec3
Submitter: PLEXdb Curator
Head of Lab: Nils Rostoks
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (6 hybridizations)
genotype
•FN362 •FN363 •Steptoe(wt)

406/574 Experiment BB104 Diurnal expression data from developing barley caryopses
Submitter: PLEXdb Curator
Head of Lab: Elke Mangelsen
Experiment Factors: time
GeneChip Type: Barley1
Experiment design (12 hybridizations)
time
•1h(dark) •9h(dark) •10h(light) •17h(light) •20h(light) •23h(light)

407/574 Experiment BB103 Microarray data from barley aleurone
Submitter: PLEXdb Curator
Head of Lab: Yong-Qiang Charles An
Experiment Factors: compound, genotype
GeneChip Type: Barley1
Experiment design (15 hybridizations)
compound
•untreated •GA •ABA •GA plus ABA
genotype
•control •sln1 mutant

408/574 Experiment BB102 Heat stress expression data from developing barley caryopses
Submitter: PLEXdb Curator
Head of Lab: Elke Mangelsen
Experiment Factors: stress condition, time
GeneChip Type: Barley1
Experiment design (12 hybridizations)
stress condition
•control •heat stress
time
•0.5 hrs •3 hrs •6 hrs

409/574 Experiment BB101 Transcript profiling of Bln1 silenced plants (BSMV-VIGS) relative to empty vector and buffer treated controls in barley-powdery mildew interactions
Submitter: Greg S Fuerst
Head of Lab: Roger P Wise, USDA-ARS
Experiment Factors: genotype, treatedoruntreated, treatment
GeneChip Type: Barley1
Experiment design (60 hybridizations)
genotype
•Clansman (Mla13) •HOR11358 (Mla9)
treatedoruntreated
•Inoc. w/ Bgh 5874 •Non-Inoc.
treatment
•Mock (Buffer Control) •BSMV:00 •BSMV:Bln1[248]

410/574 Experiment BB96 Genetic regulation of barley gene expression in response to the powdery mildew fungus, Blumeria graminis f. sp. hordei (Bgh)
Submitter: Greg S Fuerst
Head of Lab: Roger P. Wise
Experiment Factors: genotype, time
GeneChip Type: Barley1
Experiment design (168 hybridizations)
genotype
•Q21861 •SM89010 •QxSM001 •QxSM002 •QxSM003 •QxSM005 •QxSM008 •QxSM010 •QxSM011 •QxSM013 •QxSM014 •QxSM015 •QxSM016 •QxSM017 •QxSM018 •QxSM019 •QxSM023 •QxSM026 •QxSM028 •QxSM029 •QxSM030 •QxSM031 •QxSM033 •QxSM034 •QxSM035 •QxSM036 •QxSM037 •QxSM038 •QxSM039 •QxSM041 •QxSM042 •QxSM043 •QxSM045 •QxSM046 •QxSM047 •QxSM048 •QxSM049 •QxSM050 •QxSM052 •QxSM054 •QxSM055 •QxSM056 •QxSM057 •QxSM058 •QxSM059 •QxSM060 •QxSM061 •QxSM062 •QxSM063 •QxSM065 •QxSM066 •QxSM067 •QxSM068 •QxSM069 •QxSM070 •QxSM073 •QxSM074 •QxSM075 •QxSM076 •QxSM077 •QxSM078 •QxSM079 •QxSM080 •QxSM082 •QxSM083 •QxSM084 •QxSM085 •QxSM086 •QxSM087 •QxSM088 •QxSM089 •QxSM090 •QxSM091 •QxSM093 •QxSM094 •QxSM095 •QxSM097 •CI 16137
time
•16 hai •32 hai

411/574 Experiment BB95 Long term cold responses in a winter barley
Submitter: Aaron G Greenup
Head of Lab: Ben Trevaskis
Experiment Factors: treatment
GeneChip Type: Barley1
Experiment design (6 hybridizations)
treatment
•Non-vernalized •Post-vernalized

412/574 Experiment BB94 Short and long term cold responses in a winter barley
Submitter: Aaron G Greenup
Head of Lab: Ben Trevaskis
Experiment Factors: treatment
GeneChip Type: Barley1
Experiment design (12 hybridizations)
treatment
•Non-vernalized •Short-term cold •Vernalized •1 day post-vernalized

413/574 Experiment BB93 Over-expression of ODDSOC2 in Golden Promise
Submitter: Aaron G Greenup
Head of Lab: Ben Trevaskis
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (6 hybridizations)
genotype
•Wild-Type •Over-expression

414/574 Experiment BB92 Transcript profiling of local and adjacent leaf responses in barley following inoculation with Pseudomonas syringae
Submitter: Graham Robert David McGrann
Head of Lab: Lesley Boyd
Experiment Factors: tissue type name, treatment
GeneChip Type: Barley1
Experiment design (12 hybridizations)
tissue type name
•Local •Adjacent
treatment
•Inoculated •Control

415/574 Experiment BB91 Transcriptome analysis of a breeding program pedigree
Submitter: Maria Muñoz
Head of Lab: Gary J. Muehlbauer
Experiment Factors: genotype, time
GeneChip Type: Barley1
Experiment design (90 hybridizations)
genotype
•Bonanza •Cree •Dickson •Excel •Lacey •M1 •M44 •M46 •M55 •M66 •M78 •Manker •Morex •Robust •Stander
time
•0 days •3 days

416/574 Experiment BB89 Gene expression in the barley spike during drought stress
Submitter: Tilahun Abebe
Head of Lab: Dr. Tilahun Abebe
Experiment Factors: stress condition, tissue type name
GeneChip Type: Barley1
Experiment design (24 hybridizations)
stress condition
•Control •Drought stress
tissue type name
•Lemma •Palea •Awn •Seed

417/574 Experiment BB88 Endophytic colonization of barley (Hordeum vulgare) roots by Pochonia chlamydosporia
Submitter: Eduardo Larriba Tornel
Head of Lab: Luis Vicente Lopez Llorca; Jose Martin Nieto
Experiment Factors: treated or untreated
GeneChip Type: Barley1
Experiment design (6 hybridizations)
treated or untreated
•control roots •inoculated whit Pochonia chlamydosporia

418/574 Experiment BB87 Expression data from malting barley seeds
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, treatment
GeneChip Type: Barley1
Experiment design (22 hybridizations)
genotype
•Morex •Legacy •Merit •Harrington
treatment
•ungerminated •steeped •1d •4d •kilned

419/574 Experiment BB86 Expression data from barley germinating grains (Part 2 of 2)
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name, time
GeneChip Type: Barley1
Experiment design (16 hybridizations)
organism part name
•endosperm •embryo
time
•0 hrs •24 hrs •48 hrs •72 hrs

420/574 Experiment BB85 Expression data from barley maturing grains (Part 1 of 2)
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name, time
GeneChip Type: Barley1
Experiment design (16 hybridizations)
organism part name
•pericarp •endosperm •embryo
time
•4 DAF •8 DAF •16 DAF •25 DAF

421/574 Experiment BB84 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, time
GeneChip Type: Barley1
Experiment design (35 hybridizations)
genotype
•Martin •HS41-1 •Moroc9-75
time
•0 days •1 days •3 days •5 days

422/574 Experiment BB83 Mercury toxicity in barley roots
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: treatment
GeneChip Type: Barley1
Experiment design (6 hybridizations)
treatment
•control •mercury

423/574 Experiment BB82 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
Submitter: PLEXdb Curator
Head of Lab: Tim Close
Experiment Factors: stress condition
GeneChip Type: Barley1
Experiment design (6 hybridizations)
stress condition
•control •mannitol

424/574 Experiment BB81 Low temperature stress in cv. Dicktoo
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: cold stress
GeneChip Type: Barley1
Experiment design (12 hybridizations)
cold stress
•control •chilling •subzero •deacclimation

425/574 Experiment BB80 ABA experiment
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: ABA treatment
GeneChip Type: Barley1
Experiment design (9 hybridizations)
ABA treatment
•ABA_control •ABA_early •ABA_late

426/574 Experiment BB79 P. aeruginosa virulent factor to barley
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen infection
GeneChip Type: Barley1
Experiment design (3 hybridizations)
pathogen infection
•PAO1 •PA5021 •control

427/574 Experiment BB78 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, organism part name, stress condition
GeneChip Type: Barley1
Experiment design (24 hybridizations)
stress condition
•salt •control
genotype
•Golden Promise •Maythorpe
organism part name
•root •shoot

428/574 Experiment BB77 Barley single feature polymorphisms and drought stress gene expression
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, stress condition
GeneChip Type: Barley1
Experiment design (21 hybridizations)
genotype
•Barke •Morex •Steptoe •OWB_Dominant •OWB_Recessive
stress condition
•Unstressed •Drought_Stressed •Pooled_Stressed_Unstressed

429/574 Experiment BB76 Structural and functional characterization of a winter malting barley
Submitter: Maria Muñoz
Head of Lab: Gary J. Muehlbauer
Experiment Factors: genotype, time
GeneChip Type: Barley1
Experiment design (12 hybridizations)
genotype
•88Ab536 •Morex
time
•0 days •3 days

430/574 Experiment BB75 Response of barley roots during the nonhost interaction with the plasmodiophorid virus vector Polymyxa betae
Submitter: Graham Robert David McGrann
Head of Lab: Effie Mutasa-Göttgens
Experiment Factors: pathogen isolates
GeneChip Type: Barley1
Experiment design (6 hybridizations)
pathogen isolates
•Mock inoculated control •Polymyxa betae

431/574 Experiment BB74 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
Submitter: Graham Robert David McGrann
Head of Lab: Effie Mutasa-Göttgens
Experiment Factors: pathogen isolates
GeneChip Type: Barley1
Experiment design (6 hybridizations)
pathogen isolates
•Mock •Polymyxa graminis

432/574 Experiment BB73 Comparative transcriptional profiling of organs of the barley spike
Submitter: Tilahun Abebe
Head of Lab: Tilahun Abebe
Experiment Factors: tissue type name
GeneChip Type: Barley1
Experiment design (12 hybridizations)
tissue type name
•Lemma •Palea •Awn •Seed

433/574 Experiment BB72 Blumeria graminis fsp hordei effects on translation initiation in compatible and incompatible barley.
Submitter: Jackson R Moeller
Head of Lab: Steve Whitham
Experiment Factors: genotype, pathogen infection, RNA fraction
GeneChip Type: Barley1
Experiment design (24 hybridizations)
genotype
•CI 16151 (Mla6) •CI 16151 m9472 (mla6)
pathogen infection
•inoculated with Bgh isolate 5874 (AVRa6) •non-inoculated
RNA fraction
•polysomal RNA •total RNA

434/574 Experiment BB71 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line, Insect Infestation
GeneChip Type: Barley1
Experiment design (24 hybridizations)
genetic line
•lina •28-4 •hsp5 •kara
Insect Infestation
•with-aphid (R. padi) •without-aphid (R. padi)

435/574 Experiment BB65 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants
Submitter: jan t svensson
Head of Lab: Timothy J. Close
Experiment Factors: genotype, temperature
GeneChip Type: Barley1
Experiment design (30 hybridizations)
temperature
•3 C •20 C
genotype
•Wild type cv. Bonus •Xantha-b12 •Xantha-s46 •Albina-f17 •Albina-e16

436/574 Experiment BB64 Genetic regulation of gene expression of barley in response to stem rust (Pgt isolate TTKS)
Submitter: Roger P Wise
Head of Lab: Roger Wise
Experiment Factors: genetic line, treated or untreated
GeneChip Type: Barley1
Experiment design (166 hybridizations)
genetic line
•Q21861 •SM89010 •QxSM001 •QxSM002 •QxSM003 •QxSM005 •QxSM008 •QxSM010 •QxSM011 •QxSM013 •QxSM014 •QxSM015 •QxSM016 •QxSM017 •QxSM018 •QxSM019 •QxSM023 •QxSM026 •QxSM028 •QxSM029 •QxSM030 •QxSM031 •QxSM033 •QxSM034 •QxSM035 •QxSM036 •QxSM037 •QxSM038 •QxSM039 •QxSM041 •QxSM042 •QxSM043 •QxSM045 •QxSM046 •QxSM047 •QxSM048 •QxSM049 •QxSM050 •QxSM052 •QxSM054 •QxSM055 •QxSM056 •QxSM057 •QxSM058 •QxSM059 •QxSM060 •QxSM061 •QxSM062 •QxSM063 •QxSM065 •QxSM066 •QxSM067 •QxSM068 •QxSM069 •QxSM070 •QxSM073 •QxSM074 •QxSM075 •QxSM076 •QxSM077 •QxSM078 •QxSM079 •QxSM080 •QxSM082 •QxSM083 •QxSM084 •QxSM085 •QxSM086 •QxSM087 •QxSM088 •QxSM089 •QxSM090 •QxSM091 •QxSM093 •QxSM094 •QxSM095 •QxSM097
treated or untreated
•Inoculated - Pgt TTKS •Mock

437/574 Experiment BB63 Late response to boron toxicity in barley leaves
Submitter: tufan mehmet oz
Head of Lab: Prof. Dr. Huseyin Avni OKTEM & Prof. Dr. Meral YUCEL, haoktem@metu.edu.tr, meraly@metu.edu.tr
Experiment Factors: treated or untreated
GeneChip Type: Barley1
Experiment design (9 hybridizations)
treated or untreated
•Control (C) •5 mM B(OH)3 treatment (5B) •10 mM B(OH)3 treatment (10B)

438/574 Experiment BB62 Barley host response to the direct application of the trichothecene mycotoxin deoxynivalenol
Submitter: Stephanie A Gardiner
Head of Lab: Gary J. Muehlbauer
Experiment Factors: time, treated or untreated
GeneChip Type: Barley1
Experiment design (24 hybridizations)
time
•1 hai •12 hai •24 hai •48 hai
treated or untreated
•Deoxynivalenol •Water

439/574 Experiment BB61 Transcriptome analysis of wild barley (H. vulgare ssp spontaneum) after pathogen inoculation
Submitter: Ben Millett
Head of Lab: Gary Muehlbauer
Experiment Factors: time, treated or untreated
GeneChip Type: Barley1
Experiment design (48 hybridizations)
treated or untreated
•C. sativus (spot blotch) •water control •P. hordei (leaf rust) •oil control
time
•12 hrs •24 hrs •36 hrs •48 hrs

440/574 Experiment BB55 Mapping barley genes to chromosome arms by transcript profiling of wheat-barley ditelosomic chromosome addition lines
Submitter: Hatice Bilgic
Head of Lab: Gary Muehlbauer
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (36 hybridizations)
genotype
•CS (Chinese Spring) •Betzes •1HS •2HS •3HS •3HL •4HS •4HL •5HS •5HL •7HS •7HL

441/574 Experiment BB54 Necrotic mutants in barley cv. Steptoe
Submitter: ling zhang
Experiment Factors: line
GeneChip Type: Barley1
Experiment design (15 hybridizations)
line
•nad1-1 •nad1-2 •nad1-3 •nad1-4 (FN242) •Steptoe

442/574 Experiment BB53 Functional Genomic Analysis Of Barley(Hordeum vulgare L.) Grain Protein Accumulation
Submitter: Aravind K Jukanti
Experiment Factors: developmental stage, genotype, tissue type
GeneChip Type: Barley1
Experiment design (24 hybridizations)
developmental stage
•14 days past anthesis •21 days past anthesis
genotype
•Karl •10-11 (NIL with high grain protein locus)
tissue type
•Leaves •Kernels

443/574 Experiment BB52 Transcriptome analysis of trichothecene-induced gene expression in barley
Submitter: Jayanand Boddu
Head of Lab: Gary J. Muehlbauer
Experiment Factors: time, Treated or untreated
GeneChip Type: Barley1
Experiment design (18 hybridizations)
time
•48 hai. •96 hai.
Treated or untreated
•WATER •MUTANT •WILD TYPE

444/574 Experiment BB50 Carbohydrate accumulation in barley leaves leads to senescence and protease gene upregulation
Submitter: David L Parrott
Head of Lab: Andreas Fischer
Experiment Factors: time, Treated or untreated
GeneChip Type: Barley1
Experiment design (21 hybridizations)
time
•0 Day •4 Day •8 Day
Treated or untreated
•untreated control •girdled •shift-girdled control

445/574 Experiment BB49 barley stem rust interaction
Submitter: ling zhang
Experiment Factors: genotype, pathogen isolates, time
GeneChip Type: Barley1
Experiment design (68 hybridizations)
genotype
•GP •Rpg1 transgenic
pathogen isolates
•mcc •qcc
time
•0 •6 •12 •18 •24 •36

446/574 Experiment BB47 Transcriptome analysis of Bowman vs 4 tillering mutants at 4 developmental stages
Submitter: Seungho Cho
Head of Lab: Muehlbauer
Experiment Factors: developmental stage, genotype
GeneChip Type: Barley1
Experiment design (60 hybridizations)
developmental stage
•young seedling •crown •immature inflorescence •immature embryo
genotype
•Bowman •als-Bowman •lnt-Bowman •cul2-Bowman •cul4-Bowman

447/574 Experiment BB46 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
Submitter: Roger P Wise
Head of Lab: Roger P Wise
Experiment Factors: genotype, pathogen isolates, time
GeneChip Type: Barley1
Experiment design (72 hybridizations)
genotype
•Mla6 •11542
pathogen isolates
•5874 •K1
time
•0 •8 •16 •20 •24 •32

448/574 Experiment BB28 Expression profiling of Morex and rpr1 mutant
Submitter: ling zhang
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (6 hybridizations)
genotype
•Morex •rrp1

449/574 Experiment BB22 Developing seeds of M955 low phytic acid barley 7 days after anthesis
Submitter: David E Bowen
Head of Lab: Edward Souza
Experiment Factors: genotype, year
GeneChip Type: Barley1
Experiment design (9 hybridizations)
genotype
•M955 LPA sib-selection •M955 WT sib-selection
year
•2003 •2004

450/574 Experiment BB21 Genetics of gene expression in barley
Submitter: Arnis Druka
Experiment Factors: genetic line
GeneChip Type: Barley1
Experiment design (41 hybridizations)
genetic line
•SM004 •SM007 •SM012 •SM013 •SM022 •SM024 •SM027 •SM041 •SM043 •SM044 •SM046 •SM061 •SM063 •SM073 •SM074 •SM079 •SM085 •SM088 •SM089 •SM116 •SM130 •SM135 •SM136 •SM140 •SM141 •SM146 •SM152 •SM155 •SM160 •SM167 •SM169 •SM173 •SM177 •SM184 •SM200 •Steptoe •Morex

451/574 Experiment BB20 Genotype-dependent gene expression in barley
Submitter: Arnis Druka
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (24 hybridizations)
genotype
•Morex •Steptoe •OWB REC •OWB DOM •Barke •Haruna Nijo •Golden Promise •Optic

452/574 Experiment BB16 Steptoe x Morex seedling leaf comparison
Submitter: Roger P Wise
Head of Lab: Roger Wise
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (6 hybridizations)
genotype
•Steptoe •Morex

453/574 Experiment BB10 Transcription profiling of barley plants containing variants of Mla1 and Mla6 powdery mildew resistance genes
Submitter: Rico A. Caldo
Head of Lab: Roger P Wise
Experiment Factors: genotype, time, Treated or untreated
GeneChip Type: Barley1
Experiment design (144 hybridizations)
genotype
•Mla1 •m508 •Mla6 •9472
time
•0 •8 •16 •20 •24 •32
Treated or untreated
•Inoculated •Non-inoculated

454/574 Experiment BB9 Barley cv Morex inoculated with Fusarium graminearum and water as mock control
Submitter: Warren Kruger
Head of Lab: Gary J. Muehlbauer
Experiment Factors: time, Treated or untreated
GeneChip Type: Barley1
Experiment design (44 hybridizations)
time
•24 •48 •72 •96 •144
Treated or untreated
•WATER •Fusarium

455/574 Experiment BB8 Microarray of barley genes in wheat-barley chromosome addition lines
Submitter: Seungho Cho
Head of Lab: Gary J. Muehlbauer
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (33 hybridizations)
genotype
•chr2H •chr2HL •chr3H •chr4H •chr5H •chr6H •chr6HL •chr6HS •chr7H •Betzes •Chinese Spring

456/574 Experiment BB7 mlo5-mediated resistance responses in barley
Submitter: Achim Fischer
Experiment Factors: disease type, genotype
GeneChip Type: Barley1
Experiment design (4 hybridizations)
disease type
•Control •Treated (Pathogen Infection)
genotype
•Mlo •mlo5

457/574 Experiment BB5 A Ca2+/calmodulin-dependent protein kinase required for symbiotic nodule development: Gene identification by transcript-based cloning
Submitter: james e hadfield
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (4 hybridizations)
genotype
•rar1-2 (mutant) •Sultan 5 (wild type)

458/574 Experiment BB4 Mla-specified Transcriptional Responses in Barley-Powdery Mildew Interactions
Submitter: Rico A. Caldo
Head of Lab: Roger P Wise
Experiment Factors: genotype, pathogen isolates, time
GeneChip Type: Barley1
Experiment design (108 hybridizations)
genotype
•CI 16137 (Mla1) •CI 16151 (Mla6) •CI 16155 (Mla13)
pathogen isolates
•Bgh 5874 •Bgh K1
time
•0 hai •8 hai •16 hai •20 hai •24 hai •32 hai

459/574 Experiment BB3 Transcription patterns during barley development
Submitter: Arnis Druka
Experiment Factors: genotype, tissue type
GeneChip Type: Barley1
Experiment design (63 hybridizations)
genotype
•Morex •Golden Promise
tissue type
•germinating seed, coleoptyle •germinating seed, radicle •germinating seed, embryo •seedling, root •seedling, crown •seedling, leaf •immature, inflorescence •floral bracts, before anthesis •pistil, before anthesis •anthers, before anthesis •5 DAP caryopsis •10 DAP caryopsis •16 DAP caryopsis •22 DAP embryo •22 DAP endosperm

460/574 Experiment BB2 Expression profiling of wild type and mutants of Sultan 5 (Mla12) barley cultivar
Submitter: Rico A. Caldo
Head of Lab: Roger P Wise
Experiment Factors: genotype, time, Treated or untreated
GeneChip Type: Barley1
Experiment design (180 hybridizations)
genotype
•Mla12 •m66 •m82 •m100 •rom1
time
•0hai •8hai •16hai •20hai •24hai •32hai
Treated or untreated
•inoculated •non-inoculated

461/574 Experiment BB1 Cross-species Detection in Barley1 GeneChip Array
Submitter: Rico A. Caldo
Head of Lab: Roger P Wise
Experiment Factors: species
GeneChip Type: Barley1
Experiment design (12 hybridizations)
species
•Barley •Wheat •Oat •Sorghum •Corn •Rice

ATH1-121501
462/574 Experiment AT143 Expression profiling of Arabidopsis wild type Col-0 and pmr5 mutant
Submitter: PLEXdb Curator
Head of Lab: Shauna Somerville
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
genotype
•Col-0 •pmr5 mutant

463/574 Experiment AT142 Oleic acid-dependent modulation of Nitric Oxide Associated 1 protein levels regulate nitric oxide mediate signaling in plant defense.
Submitter: PLEXdb Curator
Head of Lab: Pradeep Kachroo
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•WT COL-0 •Mutant ssi2 •Mutant ssi2 act1 •Mutant ssi2 sid2

464/574 Experiment AT141 Effect of oligomycin on transcript levels in Arabidopsis seedling cultures
Submitter: PLEXdb Curator
Head of Lab: Staffan Persson
Experiment Factors: time, treatment
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
treatment
•control (EtOH) •oligomycin
time
•1 hrs •4 hrs

465/574 Experiment AT140 The effects of infection with wild-type or mutant cucumber mosaic virus on the Arabidopsis transcriptome
Submitter: PLEXdb Curator
Head of Lab: John Carr
Experiment Factors: pathogen strains
GeneChip Type: ATH1-121501
Experiment design (9 hybridizations)
pathogen strains
•mock-At •CMV-WT •CMV-A2b

466/574 Experiment AT139 Expression data from low R:FR - JA crosstalk in Arabidopsis
Submitter: PLEXdb Curator
Head of Lab: Carlos L. Ballare
Experiment Factors: growth regulator, light
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
light
•high R/FR •low R/FR
growth regulator
•mock •JA

467/574 Experiment AT138 Expression data from LCM-captured Arabidopsis root cells after challenge with Meloidogyne incognita
Submitter: PLEXdb Curator
Head of Lab: Christopher Taylor
Experiment Factors: nematode infestation, time
GeneChip Type: ATH1-121501
Experiment design (16 hybridizations)
nematode infestation
•control root cell •infested giant cell
time
•14 dai •21 dai

468/574 Experiment AT137 Arabidopsis thaliana wild-type and pskr1-5 transcriptome upon the compatible interaction with Hyaloperonospora arabidopsidis
Submitter: PLEXdb Curator
Head of Lab: Harald Keller
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (8 hybridizations)
genotype
•wild type •pskr1-5
pathogen inoculation
•water •Emwa1

469/574 Experiment AT136 Transcriptome profiling of LecRKVI.2 over-expressor plants.
Submitter: PLEXdb Curator
Head of Lab: Laurent Zimmerli
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
genotype
•Col-O •OH1

470/574 Experiment AT135 SA, elf18 treatment of WT and tbf1 mutant
Submitter: PLEXdb Curator
Head of Lab: Xinnian Dong
Experiment Factors: genotype, treatment
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
genotype
•WT •tbf1 mutant
treatment
•mock SA •SA •mock elf •elf

471/574 Experiment AT134 Volatiles of two growth-inhibiting rhizobacteria commonly enroll AtWRKY18 function
Submitter: PLEXdb Curator
Head of Lab: Birgit Piechulla
Experiment Factors: time, treatment
GeneChip Type: ATH1-121501
Experiment design (20 hybridizations)
time
•0 hrs •6 hrs •12 hrs •24 hrs
treatment
•untreated •Sp HRO-C48 •Sm R3089

472/574 Experiment AT133 affy_syringae_malaga_athaliana-Role of different proteases in plant defence
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genotype, pathogen infection
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
genotype
•col •ulp1c/ulp1d
pathogen infection
•No treatment •mock •pto-wt •pto-hop •pto-hop-mutant

473/574 Experiment AT132 Ascorbic acid-dependent regulation of growth involves abscisic acid signalling through ABI-4
Submitter: PLEXdb Curator
Head of Lab: Christine Foyer
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (27 hybridizations)
genotype
•Col 0-1 •abi4-102-I •vtc2-I •abi4-vtc2-I •Col 0-II •abi4-102-II •vtc1-II

474/574 Experiment AT131 Transcriptome analysis of vtc1, abi4-102 and wild type Col 0
Submitter: PLEXdb Curator
Head of Lab: Christine Foyer
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (10 hybridizations)
genotype
•Col O •abi4-102 •vtc1

475/574 Experiment AT130 Transcriptome analysis of vtc2, abi4-102 and the corresponding double mutant abi4 vtc2
Submitter: PLEXdb Curator
Head of Lab: Christine Foyer
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (17 hybridizations)
genotype
•Col O •abi4-102 •vtc2 •abi4-vtc2

476/574 Experiment AT129 Gene expression data from ABA, [5-(3,4-Dichlorophenyl)Furan-2-yl]-Piperidin-1-ylMethanethione (DFPM), and ABA+DFPM treated Arabidopsis thaliana seedlings.
Submitter: PLEXdb Curator
Head of Lab: Julian Schroeder
Experiment Factors: compound
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
compound
•control •DFPM •ABA •ABADFPM

477/574 Experiment AT128 Comparison of gene expression profiles between erf5/6 and WT Arabidopsis in response to chitooctaose
Submitter: PLEXdb Curator
Head of Lab: Gary Stacey
Experiment Factors: genotype, treatment
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•erf5/6 mutant •WT
treatment
•water •chitooctaose

478/574 Experiment AT127 Effect of biotin deficiency on gene expression in Aravbidopsis leaves
Submitter: PLEXdb Curator
Head of Lab: E. Tapio Palva
Experiment Factors: genetic line, treatment
GeneChip Type: ATH1-121501
Experiment design (9 hybridizations)
genetic line
•wild type •bio4-1
treatment
•water •200µM biotin

479/574 Experiment AT126 affy_l2bctv_ath-Expression viral protein L2 BCTV in Arabidopsis thaliana
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (9 hybridizations)
genotype
•L2.5 •L2.4 •Wt

480/574 Experiment AT125 LEAFY target genes reveal a link between flower development and biotic stimulus response (III)
Submitter: PLEXdb Curator
Head of Lab: Doris Wagner
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (8 hybridizations)
genotype
•LFY-GR •WT

481/574 Experiment AT124 Effect of gibberellins on metabolism during rosette growth in Arabidopsis
Submitter: PLEXdb Curator
Head of Lab: Bernd Muller-Roeber
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
treatment
•control •PBZ •GA

482/574 Experiment AT123 Gene expression from Arabidopsis under high light conditions
Submitter: PLEXdb Curator
Head of Lab: Juan B. Arellano
Experiment Factors: stress condition
GeneChip Type: ATH1-121501
Experiment design (9 hybridizations)
stress condition
•control •dark •light

483/574 Experiment AT122 G3P triggered changes in systemic transcriptome
Submitter: PLEXdb Curator
Head of Lab: Pradeep Kachroo
Experiment Factors: compound
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
compound
•mock •G3P

484/574 Experiment AT121 Gene expression changes in wild type, tga2tga3tga5tga6, and sid2-2 plants after treatment with the safeners mefenpyr and isoxadifen
Submitter: PLEXdb Curator
Head of Lab: Claus Schwechheimer
Experiment Factors: compound, genotype
GeneChip Type: ATH1-121501
Experiment design (18 hybridizations)
genotype
•ColO •4tga •sid2-2
compound
•mock •safener

485/574 Experiment AT120 Evidence that XRN4, an Arabidopsis homolog of exoribonuclease XRN1, preferentially impacts transcripts with certain sequences or in particular functional categories.
Submitter: PLEXdb Curator
Head of Lab: Pamela J. Green
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
genotype
•xrn4-5 •Col-O

486/574 Experiment AT119 comparison of powdery mildew-induced gene expression between Col-0 and the edr1 mutant
Submitter: PLEXdb Curator
Head of Lab: Roger Innes
Experiment Factors: genotype, time
GeneChip Type: ATH1-121501
Experiment design (32 hybridizations)
genotype
•Col-O •edr1
time
•0hr •18hr •36hr •96hr

487/574 Experiment AT118 H. arabidopsidis EMWA1 infection, time course experiment
Submitter: PLEXdb Curator
Head of Lab: Xinnian Dong
Experiment Factors: genotype, time
GeneChip Type: ATH1-121501
Experiment design (20 hybridizations)
genotype
•WT •rpp4
time
•0 day •0.5 day •2 days •4 days •6 days

488/574 Experiment AT117 The impact of BRCA2A and SSN2 on plant defense genes
Submitter: PLEXdb Curator
Head of Lab: Xinnian Dong
Experiment Factors: compound, genotype
GeneChip Type: ATH1-121501
Experiment design (17 hybridizations)
genotype
•npr1_sni1 •npr1_sni1_brca2a •npr1_sni1_ssn2
compound
•water •SA

489/574 Experiment AT116 Expression data from Arabidopsis seedlings treated with Pseudomonas aeruginosa (strain PA14)
Submitter: PLEXdb Curator
Head of Lab: Frederick M. Ausubel
Experiment Factors: pathogen strains
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
pathogen strains
•PA14 •PA14-gacA mutant

490/574 Experiment AT115 wt and opr3 control and systemic wounding
Submitter: PLEXdb Curator
Head of Lab: Robert Fluhr
Experiment Factors: genotype, treatment
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
genotype
•wt •opr3
treatment
•control •wounding

491/574 Experiment AT114 GENE-counter, a computational and statistical pipeline for assessing RNA-Seq data for genome-wide expression differences
Submitter: PLEXdb Curator
Head of Lab: Jeff Chang
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
treatment
•hrcC •MgCl2

492/574 Experiment AT113 Transcription profiling of WT and dsr1 Arabidopsis seedlings treated with salicylic acid
Submitter: PLEXdb Curator
Head of Lab: Karam B. Singh
Experiment Factors: compound, genotype
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•WT •dsr1
compound
•mock •SA

493/574 Experiment AT112 Expression data from Arabidopsis thaliana - Pseudomonas interaction
Submitter: PLEXdb Curator
Head of Lab: Joost T. Van Dongen
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
treatment
•control •Pseudomonas G62

494/574 Experiment AT111 Study of the effect of C2 on the transcriptome and the response to MeJA
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: compound, genetic line
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genetic line
•transgenic C2 •control LUC
compound
•NaCl control •MeJA

495/574 Experiment AT110 Expression data in response to neonicotinoid insecticides
Submitter: PLEXdb Curator
Head of Lab: Mary C Wildermuth
Experiment Factors: compound
GeneChip Type: ATH1-121501
Experiment design (8 hybridizations)
compound
•untreated •CLO •IMI •SA

496/574 Experiment AT109 Genes regulated by GRF1 and GRF3 in Arabidopsis roots
Submitter: Tarek Hewezi
Head of Lab: Thomas Baum
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (15 hybridizations)
genotype
•Arabidopsis thaliana ecotypes Col-0 •Arabidopsis thaliana ecotypes WS •Triple mutant grf1/grf2/grf3 •P35S:rGRF1 overexpression •P35S:rGRF3 overexpression

497/574 Experiment AT108 High resolution NO3 response of Arabidopsis Roots
Submitter: PLEXdb Curator
Head of Lab: Gloria M Coruzzi
Experiment Factors: compound, time
GeneChip Type: ATH1-121501
Experiment design (26 hybridizations)
time
•0 mins •3 mins •6 mins •9 mins •12 mins •15 mins •20 mins
compound
•Basal medium •KCl •KNO3

498/574 Experiment AT107 Expression data from Arabidopsis Seed Compartments at 5 discrete stages of development
Submitter: PLEXdb Curator
Head of Lab: Robert B. Goldberg
Experiment Factors: developmental stage name, organism part name
GeneChip Type: ATH1-121501
Experiment design (87 hybridizations)
developmental stage name
•globular stage •pre-globular stage •linear-cotyledon stage •heart stage •mature green stage •bending cotyledon stage
organism part name
•embryo proper •cellularized endosperm •micropylar endosperm •peripheral endosperm •chalazal endosperm •chalazal seed coat •seed coat •whole seeds •suspensor

499/574 Experiment AT106 Expression data from Arabidopsis seed compartments at the bending coyledon stage
Submitter: PLEXdb Curator
Head of Lab: Robert B. Goldberg
Experiment Factors: organism part name
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
organism part name
•embryo proper •peripherial endosperm •chalazal endosperm •chalazal seed coat •general seed coat •whole seeds

500/574 Experiment AT105 Expression data from Arabidopsis seed compartments at the mature green stage.
Submitter: PLEXdb Curator
Head of Lab: Robert B. Goldberg
Experiment Factors: organism part name
GeneChip Type: ATH1-121501
Experiment design (14 hybridizations)
organism part name
•embryo proper •micropylar endosperm •peripherial endosperm •chalazal endosperm •chalazal seed coat •seed coat •whole seeds

501/574 Experiment AT104 Expression data from Arabidopsis seed compartments at the heart stage.
Submitter: PLEXdb Curator
Head of Lab: Robert B. Goldberg
Experiment Factors: organism part name
GeneChip Type: ATH1-121501
Experiment design (16 hybridizations)
organism part name
•embryo proper •micropylar endosperm •peripheral endosperm •chalazal endosperm •chalazal seed coat •general seed coat •whole seeds

502/574 Experiment AT103 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
Submitter: PLEXdb Curator
Head of Lab: Robert B. Goldberg
Experiment Factors: organism part name
GeneChip Type: ATH1-121501
Experiment design (14 hybridizations)
organism part name
•embryo proper •cellularlized endosperm •chalazal endosperm •chalazal seed coat •general seed coat •whole seeds •micropylar endosperm

503/574 Experiment AT102 Expression data from Arabidopsis seed compartments at the pre-globular stage
Submitter: PLEXdb Curator
Head of Lab: Robert B. Goldberg
Experiment Factors: organism part name
GeneChip Type: ATH1-121501
Experiment design (14 hybridizations)
organism part name
•embryo proper •micropylar endosperm •peripheral endosperm •chalazal endosperm •chalazal seed coat •general seed coat •whole seed sections

504/574 Experiment AT101 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
Submitter: PLEXdb Curator
Head of Lab: Robert B. Goldberg
Experiment Factors: organism part name
GeneChip Type: ATH1-121501
Experiment design (17 hybridizations)
organism part name
•embryo proper •suspensor •micropylar endosperm •peripheral endosperm •chalazal endosperm •chalazal seed coat •general seed coat •whole seeds

505/574 Experiment AT100 Transcriptome changes triggered by Hyaloperonospora parasitica arabidopsis Noco2 in WT and wrky72 mutants at 96 hpt
Submitter: PLEXdb Curator
Head of Lab: Thomas Eulgem
Experiment Factors: genotype, pathogen infection
GeneChip Type: ATH1-121501
Experiment design (18 hybridizations)
genotype
•Wildtype •wrky72-1 mutant •wrky72-2 mutant
pathogen infection
•mock •HpaNoco2 treated

506/574 Experiment AT99 Comparison between NuGEN's WT-Ovation Pico and One-Direct Amplification Systems
Submitter: PLEXdb Curator
Head of Lab: Lauren M McIntyre
Experiment Factors: Amplification method, Nematode infection
GeneChip Type: ATH1-121501
Experiment design (20 hybridizations)
Amplification method
•OneDirect •Pico
Nematode infection
•Control Root Cells •Giant Cells

507/574 Experiment AT98 Microarray analysis of cross-talks between Jasmonate acid and ethylene signaling in Arabidopsis seedlings
Submitter: PLEXdb Curator
Head of Lab: Hongwei Guo
Experiment Factors: strain, treatment
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
strain
•Col-0 •coi1-2 •ein3eil1
treatment
•Mock •MeJA

508/574 Experiment AT97 Arabidopsis thaliana/Phytophthora parasitica compatible interaction transcriptome
Submitter: PLEXdb Curator
Head of Lab: Harald Keller
Experiment Factors: time
GeneChip Type: ATH1-121501
Experiment design (10 hybridizations)
time
•0 hai •2.5 hai •6 hai •10.5 hai •30 hai

509/574 Experiment AT96 Arabidopsis pvip mutants
Submitter: PLEXdb Curator
Head of Lab: Prof. Andy Maule
Experiment Factors: strain
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
strain
•Col-0 wildtype •pvip1-pvip2 RNAi

510/574 Experiment AT95 Biological function of Pip3
Submitter: PLEXdb Curator
Head of Lab: Dr. Pascal Gamas
Experiment Factors: genetic line
GeneChip Type: ATH1-121501
Experiment design (27 hybridizations)
genetic line
•KO-Pip3 •pGli-69-24 •pGli-69-31 •Pip3-3HA6H-5 •Pip3-3HA6H-1 •Pip3-3HA-9 •Pip3-3HA-1 •Nd-1 •Col-0

511/574 Experiment AT94 Systemic responses to Pseudomonas syringae infection
Submitter: PLEXdb Curator
Head of Lab: Prof. Murray Grant
Experiment Factors: pathogen strain, time
GeneChip Type: ATH1-121501
Experiment design (27 hybridizations)
time
•8 hai •12 hai •21 hai
pathogen strain
•DC3000 wildtype •hrpA mutant •avrRpm1

512/574 Experiment AT93 Differential gene expression profiling from Arabidopsis thaliana wild type (Columbia-0) and lht1 mutant leaves
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen inoculation, strain
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
strain
•Wildtype •Mutant
pathogen inoculation
•Pst •Untreated

513/574 Experiment AT92 pad4 vs. pad4 est1b
Submitter: PLEXdb Curator
Head of Lab: Karel Riha
Experiment Factors: strain
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
strain
•pad4 mutant •pad4 est1b doublemutant

514/574 Experiment AT91 Arabidopsis thaliana mutant leaves treated with Pseudomonas syringae ES4326
Submitter: PLEXdb Curator
Head of Lab: Jane Glazebrook
Experiment Factors: pathogen inoculation, strain
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
strain
•coi1 •Col0 •ein2 •npr1 •pad2 •pad4 •sid2
pathogen inoculation
•mock •PsmES4326

515/574 Experiment AT90 Gene expression changes in Arabidopsis thaliana treated with Myzus persicae saliva
Submitter: PLEXdb Curator
Head of Lab: Dr. Georg Jander
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
treatment
•Control •M-persicae saliva

516/574 Experiment AT89 Indolic metabolites are required for antifungal defense of the Arabidopsis mlo2 mutant
Submitter: PLEXdb Curator
Head of Lab: Ralph Panstruga
Experiment Factors: genotype, time
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
genotype
•Wildtype •mlo-triple mutant
time
•5 weeks •6 weeks •7 weeks

517/574 Experiment AT88 Effect of auxin signaling on flg22 response
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: strain, time, treatment
GeneChip Type: ATH1-121501
Experiment design (45 hybridizations)
strain
•Wildtype •AFB1 •miR393
treatment
•flg22 •Atum •NAA •NAA/flg
time
•0 hrs •1 hrs •2 hrs

518/574 Experiment AT87 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: strain, time
GeneChip Type: ATH1-121501
Experiment design (18 hybridizations)
time
•0 hrs •90-105 mins •2-4 hrs •6 hrs
strain
•Wildtype •AtMYB30

519/574 Experiment AT86 Arabidopsis thaliana six days after infection with Agrobacterium tumefaciens
Submitter: PLEXdb Curator
Head of Lab: Prof. Hedrich
Experiment Factors: pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (9 hybridizations)
pathogen inoculation
•mock-inoculated •C58 A-tumefaciens •GV3101 A-tumefaciens

520/574 Experiment AT85 Identification of early flg22 responsive genes in Arabidopsis seedlings
Submitter: PLEXdb Curator
Head of Lab: Jen Sheen
Experiment Factors: time
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
time
•Control 0 mins •30 mins •60 mins

521/574 Experiment AT84 Transcript profile of chitosan-treated Arabidopsis seedlings
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
treatment
•mock •chitosan

522/574 Experiment AT83 Arabidopsis thaliana gene expression changes upon treatment with green peach aphid saliva
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: insect infestation
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
insect infestation
•control •M-persicae infested

523/574 Experiment AT82 Identification of early flg22 responsive genes in Arabidopsis mesophyll cells
Submitter: PLEXdb Curator
Head of Lab: Jen Sheen
Experiment Factors: time
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
time
•Control 0 mins •30 mins •60 mins

524/574 Experiment AT81 Identification of CPK5ac and CPK11ac early target genes in Arabidopsis mesophyll cells
Submitter: PLEXdb Curator
Head of Lab: Jen Sheen
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
treatment
•Control plasmid DNA •CPK5ac-constitutive •CPK11ac-constitutive

525/574 Experiment AT80 Laser microdissection of Arabidopsis cells at the powdery mildew infection site
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, pathogen inoculation, tissue type name
GeneChip Type: ATH1-121501
Experiment design (16 hybridizations)
genotype
•Col-0 •eds16
tissue type name
•laser microdisected •whole leaf •whole leaf amplified •leaf scrape
pathogen inoculation
•G-orontii •uninoculated

526/574 Experiment AT79 Expression profiling of the Arabidopsis Mediator complex mutant pft1/med25 and wildtype infected with Fusarium oxysporum
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (16 hybridizations)
pathogen inoculation
•Mock •F-oxysporum
genotype
•Col-0-WT •pft1-mut

527/574 Experiment AT78 Expression data from Arabidopsis Seedlings treated with Salicylic Acid
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound
GeneChip Type: ATH1-121501
Experiment design (5 hybridizations)
compound
•Salicylic Acid •Water

528/574 Experiment AT77 Arabidopsis thaliana three hours after infection with Agrobacterium tumefaciens
Submitter: PLEXdb Curator
Head of Lab: Prof. Hedrich
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (15 hybridizations)
treatment
•mock •Agr-tum-C58-inoculated •Agr-tum-GV3101-inoculated

529/574 Experiment AT76 Transcriptome of mature Arabidopsis thaliana crown galls
Submitter: PLEXdb Curator
Head of Lab: Prof. Hedrich
Experiment Factors: pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (8 hybridizations)
pathogen inoculation
•mock •Agr-tum-C58-inoculated

530/574 Experiment AT75 Transcriptome changes triggered by the synthetic defense elicitors DCA and INA in Arabidopsis thaliana
Submitter: PLEXdb Curator
Head of Lab: Thomas Eulgem
Experiment Factors: strain, time, treatment
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
strain
•Col-0 •npr1-3
treatment
•DCA •INA •Mock
time
•2 days •6 days

531/574 Experiment AT74 Golovinomyces orontii time course with Col-0 and eds16-1
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, pathogen inoculation, time
GeneChip Type: ATH1-121501
Experiment design (56 hybridizations)
genotype
•Col-0 •eds16-1
pathogen inoculation
•G-orontii •Uninoculated
time
•0 hai •6 hai •1 dpi •3 dpi •5 dpi •7 dpi

532/574 Experiment AT73 Flg22 regulates MAP kinase 6 interaction with an ethylene response factor substrate via ethylene
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: strain, treatment
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
strain
•Col-0 •erf104-ko •35S::ERF104 •mpk6-ko
treatment
•Flg22 •Water

533/574 Experiment AT72 C. fulvum Avr2
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
genetic line
•Col-0 •Avr2-transgenic

534/574 Experiment AT71 Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
pathogen inoculation
•G-rosea Spores •Filter Paper Control

535/574 Experiment AT70 Expression profiling of the overexpression of MILDEW-INDUCED LESIONS 4
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (8 hybridizations)
treatment
•Water •BTH

536/574 Experiment AT69 Comparing gene expression between wild type and trichomeless mutants
Submitter: PLEXdb Curator
Head of Lab: Erich Grotewold
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
genotype
•wildtype •gl1 •ttg1 •gl3egl3

537/574 Experiment AT68 MILDEW-INDUCED LESIONS 4 encodes a novel regulator of the salicylic acid defense response
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: strain, treatment
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
strain
•Col-0 •mil4 •mil4sid2 •sid2
treatment
•Water •BTH

538/574 Experiment AT67 A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: strain, treatment
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
strain
•Wildtype •Chitin-Receptor-Mut
treatment
•Chitooctaose •Water

539/574 Experiment AT66 Systemic response to avirulent bacterial infection
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (9 hybridizations)
pathogen inoculation
•P-syr DC3000 •P-syr DC3000(hrpA) •P-syr DC3000(avrRpm1)

540/574 Experiment AT65 Group II-A WRKY transcription factors and early leaf senescence
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen inoculation, strain
GeneChip Type: ATH1-121501
Experiment design (7 hybridizations)
strain
•Col-0 •WRKY40 •WRKY18 •WRKY60 •WRKY18/40 •WRKY53
pathogen inoculation
•Control •Pst-DC3000

541/574 Experiment AT64 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•Col-0 WT •gh3.5-1D Mutant
pathogen inoculation
•Pst DC3000(avrRpt2) •Uninoculated Control

542/574 Experiment AT63 Silverleaf whitefly 2nd instar feeding on 7-week old Arabidopsis thaliana rosette leaves
Submitter: PLEXdb Curator
Head of Lab: Dr. Linda Walling
Experiment Factors: insect infestation
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
insect infestation
•Whitefly Infested •Uninfested

543/574 Experiment AT59 Response to Erysiphe orontii infection, time course experiment
Submitter: PLEXdb Curator
Head of Lab: Fred Ausubel
Experiment Factors: pathogen infection, time
GeneChip Type: ATH1-121501
Experiment design (48 hybridizations)
pathogen infection
•Inoculated •Non-Inoculated
time
•6 hai •12 hai •18 hai •24 hai •48 hai •72 hai •96 hai •120 hai

544/574 Experiment AT54 UV-B Responses in Light Grown Plants: Similarities to Biotic Stress
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
treatment
•A1-UV-B •A2-UV-A •A3-Visible Light •A4-P-parasitica-on-resist •A5-mock water treatment •A6-P-parasitica-on-suscept

545/574 Experiment AT53 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
pathogen inoculation
•A-tumefaciens-induced tumours •Needle injury control

546/574 Experiment AT52 Pseudomonas half leaf injection
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen inoculation, time
GeneChip Type: ATH1-121501
Experiment design (32 hybridizations)
pathogen inoculation
•P-syr-avr •P-syr •Mock-MgCl2 •No-treat-control
time
•0 hrs •4 hrs •8 hrs •16 hrs •24 hrs •48 hrs

547/574 Experiment AT51 Response to Botrytis cinerea infection
Submitter: PLEXdb Curator
Experiment Factors: pathogen inoculation, time
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
pathogen inoculation
•B-Cinerea •Control
time
•18 hrs •48 hrs

548/574 Experiment AT50 Growth promotion of Arabidopsis by Trichoderma hamatum
Submitter: PLEXdb Curator
Head of Lab: Christopher Thornton
Experiment Factors: pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (2 hybridizations)
pathogen inoculation
•control •Trichoderma

549/574 Experiment AT49 Transcriptome changes of Arabidopsis during pathogen and insect attack
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pest infestation, time
GeneChip Type: ATH1-121501
Experiment design (14 hybridizations)
pest infestation
•control •avrPstDC3000 •Abrassicicola •Prapae •F-occidentalis •M-persicae
time
•12 hrs •24 hrs •48 hrs •72 hrs

550/574 Experiment AT48 Comparative ABA-treatment of Col-O vector control and transgenic plants
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, treatment
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
genotype
•ERD15-overexp •control
treatment
•ABA •no-ABA

551/574 Experiment AT46 Targets of AtWRKY27 in Arabidopsis leaves
Submitter: PLEXdb Curator
Head of Lab: Dr. Imre E. Somssich
Experiment Factors: genetic line
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
genetic line
•empty-vect-XVE-SALK •empty-vect-XVE-ETL •WK27-XVE-SALK •WK27-XVE-ETL

552/574 Experiment AT44 Tween 20 inducible genes
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound, time
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
compound
•water •Tween20
time
•1 hrs •2.5 hrs

553/574 Experiment AT43 Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutants
Submitter: PLEXdb Curator
Head of Lab: Athanasios Theologis
Experiment Factors: compound, genotype
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
genotype
•col_wt •nph4-1(arf7) •arf19-1 •nph4-1_and_arf19-1
compound
•Control •Auxin

554/574 Experiment AT42 The effect of TuMV on translation initiation in Arabidopsis.
Submitter: Jackson R Moeller
Head of Lab: Steve Whitham
Experiment Factors: pathogen infection, RNA fraction
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
pathogen infection
•TuMV inoculated •mock inoculated
RNA fraction
•polysomal RNA •total RNA

555/574 Experiment AT41 Expression Atlas of Arabidopsis Development, Mutants (AtGenExpress)
Submitter: Hong Lu
Head of Lab: Detlef Weigel, Jan Lohmann, Markus Schmid
Experiment Factors: genotype, organism part name
GeneChip Type: ATH1-121501
Experiment design (60 hybridizations)
genotype
•Col-0 •ag-12 •ap1-15 •ap2-6 •ap3-6 •clv3-7 •lfy-12 •ufo-1 •gl1T
organism part name
•flow12 •inflo •roset4_1l •roset12

556/574 Experiment AT40 Expression Atlas of Arabidopsis Development (AtGenExpress)
Submitter: Hong Lu
Head of Lab: Detlef Weigel, Jan Lohmann, Markus Schmid
Experiment Factors: organism part name
GeneChip Type: ATH1-121501
Experiment design (189 hybridizations)
organism part name
•Col-0_cotyl •Col-0_hyp •Col-0_root7 •Col-0_veg_leaf •Col-0_leaf_1-2 •Col-0_shoot_veg •Col-0_seedl_green •Col-0_shoot_trans •Col-0_root17 •Col-0_roset4_1l •Col-0_roset2 •Col-0_roset4 •Col-0_roset6 •Col-0_roset8 •Col-0_roset10 •Col-0_roset12 •Col-0_lf7_petio •Col-0_lf7_prox •Col-0_lf7_distal •Col-0_whole21d •Col-0_whole22d •Col-0_whole23d •Col-0_senescent •Col-0_cauline •Col-0_stem_2nd •Col-0_stem_1st •Col-0_inflo •Col-0_flow9 •Col-0_flow10/11 •Col-0_flow12 •Col-0_flow12_sepal •Col-0_flow12_petal •Col-0_flow12_stam •Col-0_flow12_carp •Col-0_flow15 •Col-0_flow15_pedi •Col-0_flow15_sepal •Col-0_flow15_petal •Col-0_flow15_stam •Col-0_flow15_carp •Col-0_pollen •Col-0_sil3 •Col-0_sil4 •Col-0_sil5 •Col-0_seed6 •Col-0_seed7 •Col-0_seed8 •Col-0_seed9 •Col-0_seed10 •Col-0_roset7 •Col-0_roset14 •Col-0_roset21 •Col-0_leaf •Col-0_flower •Col-0_root_MS1 •Col-0_root_GM-8 •Col-0_root_GM5-8 •Col-0_seedl_GM •Col-0_seedl_GM5 •Col-0_root_GM-21 •Col-0_root_GM5-21 •Col-0_sedlGM-21 •Col-0_sedlGM5-21

557/574 Experiment AT31 Penetration resistance in Arabidopsis: Wild-type and ataf1-1 mutant response to Bgh 12 hrs after inoculation, 2*2 factorial design
Submitter: Michael Krogh Jensen
Head of Lab: David B. Collinge
Experiment Factors: genotype, treated or untreated
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•Wild-type Arabidopsis, ecotype Col-0 •ataf1-1 mutant, ecotype Col-0
treated or untreated
•Un-inoculated •Bgh inoculated

558/574 Experiment AT26 3-week old Arabidopsis Col-0 and pmr4 plants were infected with Erysiphe cichoracearum, 3dpi
Submitter: Shiquan Wu
Head of Lab: David B. Collinge
Experiment Factors: organism part; treated or untreated
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•Wild-type Arabidopsis, ecotype Col-0 •ataf1-1 mutant, ecotype Col-0
treated or untreated
•Un-inoculated •Bgh inoculated

559/574 Experiment AT23 AtGenExpress: Pseudomonas half leaf injection
Submitter: Lishuang Shen
Head of Lab: David B. Collinge
Experiment Factors: pathogen isolates; time
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•Wild-type Arabidopsis, ecotype Col-0 •ataf1-1 mutant, ecotype Col-0
treated or untreated
•Un-inoculated •Bgh inoculated

560/574 Experiment AT20 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses-- cold damage repair
Submitter: Lishuang Shen
Head of Lab: Dr Gareth Warren
Experiment Factors: time
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
time
•0 •T1 •T2

561/574 Experiment AT19 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses- cold damage-prevention
Submitter: Lishuang Shen
Head of Lab: Dr Gareth Warren
Experiment Factors: genotype, temperature
GeneChip Type: ATH1-121501
Experiment design (20 hybridizations)
genotype
•Col0 •sfr2 •sfr3 •sfr6
temperature
•COLD •NORMAL •DROUGHT

562/574 Experiment AT18 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
Submitter: Lishuang Shen
Head of Lab: Dr Malcolm Campbell
Experiment Factors: genotype, organism part
GeneChip Type: ATH1-121501
Experiment design (36 hybridizations)
genotype
•Col0 •AtMYB61KO •AtMYB51KO •abi1 •aba1 •axr1 •max4 •Ler
organism part
•cork •xylem •hypocotyl

563/574 Experiment AT17 Indole acetic acid treatment-dose response and time course
Submitter: Lishuang Shen
Head of Lab: Christopher Town
Experiment Factors: compound, time
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
compound
•IAA0.1um •IAA1um
time
•0hai •1hai •3hai

564/574 Experiment AT16 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
Submitter: Lishuang Shen
Head of Lab: Dr Nicholas Kruger
Experiment Factors: dose, genotype
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
dose
•wild type •tpt-1
genotype
•Low light •High light

565/574 Experiment AT15 Analysis of anther development by analysing downstream genes controlled by MS1
Submitter: Lishuang Shen
Head of Lab: Dr Zoe Wilson
Experiment Factors: genotype, tissue type
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•ms1 •Ler-0 wt
tissue type
•Young Flower Buds •Old Flower Buds

566/574 Experiment AT14 Genes affected by hog1 alleviation of CHS silencing
Submitter: Lishuang Shen
Head of Lab: Dr Ian Furner
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (8 hybridizations)
genotype
•CHS-silenced type (ECG) •anthocyanin-producing revertants (15B)

567/574 Experiment AT13 Impact of Type III effectors on plant defense responses
Submitter: PLEXdb Curator
Head of Lab: Dr Murray Grant
Experiment Factors: compound, time
GeneChip Type: ATH1-121501
Experiment design (27 hybridizations)
compound
•Mock •DC3000 •DC3000hrpA •DC3000::avrRpm1
time
•2hr •4hr •12hr

568/574 Experiment AT12 Gene expression and carbohydrate metabolism through the diurnal cycle
Submitter: Lishuang Shen
Head of Lab: Dr Steve Smith
Experiment Factors: time
GeneChip Type: ATH1-121501
Experiment design (22 hybridizations)
time
•0hr •1hr •2hr •4hr •8hr •12hr •13hr •14hr •16hr •20hr •24hr

569/574 Experiment AT11 Transcriptome analysis of glyoxylate cycle knock-out mutants in early stages of seedling development
Submitter: Lishuang Shen
Head of Lab: Dr Steven Smith
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•KOs in malate synthase (ms) •KOs in isocitrate lyase (icl) •Columbia •Ws

570/574 Experiment AT10 Arabidopsis thaliana gene expression after 6 days in shoot induction medium
Submitter: Rhonda DeCook
Head of Lab: Dan
Experiment Factors: genetic line
GeneChip Type: ATH1-121501
Experiment design (30 hybridizations)
genetic line
•line 4 •line 5 •line 13 •line 33 •line 35 •line 37 •line 115 •line 190 •line 191 •line 194 •line 217 •line 231 •line 232 •line 238 •line 242 •line 245 •line 263 •line 267 •line 283 •line 284 •line 288 •line 295 •line 302 •line 303 •line 332 •line 356 •line358 •line 367 •line 370 •line 377

571/574 Experiment AT8 Expression analysis of Arabidopsis suspension cells during sucrose starvation.
Submitter: Diane C Bassham
Experiment Factors: compound, time
GeneChip Type: ATH1-121501
Experiment design (9 hybridizations)
compound
•Plus Sucrose •Minus Sucrose •Minus Suc/Plus PEG
time
•0 hour •24 hour •48 hour

AG
572/574 Experiment AT7 The Transcriptional Innate Immune Response to flg22-Interplay and Overlap with Avr Gene-Dependent Defense Responses and Bacterial Pathogenesis
Submitter: Lishuang Shen
Experiment Factors: cell type; compound; time
GeneChip Type: AG
Experiment design (9 hybridizations)
compound
•Plus Sucrose •Minus Sucrose •Minus Suc/Plus PEG
time
•0 hour •24 hour •48 hour

ATH1-121501
573/574 Experiment AT6 Loss of a callose synthase results in salicylic acid-dependent disease resistance
Submitter: Lishuang Shen
Head of Lab: Somerville, Shauna
Experiment Factors: genotype, pathogen isolates
GeneChip Type: ATH1-121501
Experiment design (16 hybridizations)
genotype
•Columbia-0 •pmr4-1
pathogen isolates
•uninoculated •inoculated

574/574 Experiment AT4 Arabidopsis thaliana gene expression during floral transition and early flower development
Submitter: Lishuang Shen
Head of Lab: Coordinator: Prof Lutz Nover
Experiment Factors: developmental stage, genotype, organism part
GeneChip Type: ATH1-121501
Experiment design (40 hybridizations)
genotype
•Col-0 wildtype with an AG::GUS reporter •Ler with an AG::GUS reporter •co (CS175) •ft (CS184) •lfy-12
organism part
•apical region
developmental stage
•0 day LD •3 day LD •5 day LD •7 day LD

 
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