Barley1 GeneChip Development
The content of
the Barley1 probe array
benefited greatly from EST sequence chromatograms and/or matching
sequence and quality value files generously provided by Dorrie Main
(Clemson University Genomics Institute, South Carolina); Andreas
Graner, Nils Stein, Winnie Weschke and Hangning Zhang (Institute of
Plant Genetics and Crop Plant Research, Gatersleben, Germany);
Kazuhiro Sato, Daisuke Saisho and Kazuyoshi Takeda (Okayama
University, Japan) and Yuji Kohara and Tadasu Shin-I (National
Institute of Genetics, Japan); Robbie Waugh, David Marshall, and Linda
Cardle (Scottish Crop Research Institute, Dundee, Scotland); Hans
Bohnert (University of Illinois); and Alan Schulman, Ari-Matti Sarén,
and Jaakko Tanskanen (Institute of Biotechnology, University of
Helsinki, Finland).
Thanks also to
David Matthews (USDA-ARS,
Cornell University, New York) for sequences that were available only
from the GrainGenes database and to Shibo Zhang and Peggy Lemaux
(University of California, Berkele! y) for help with common reporter
gene sequences, Warren Krueger (University of Minnesota) for
assistance with detection of fungal sequences, and Jan Svensson
(University of California, Riverside) for assistance with chimera
detection.
Special thanks
goes to Xiaoqiu Huang
(Iowa State University), for providing customized versions of the CAP3
assembly program and answering many questions about the algorithms,
Dan Nettleton (Iowa State University) for advice on experimental
design, Qunfeng Dong (PlantGDB, Iowa State University) and Doreen Ware
(Gramene Database, Cold Spring Harbor, New York) for facilitating
linkage with BarleyBase, and the Affymetrix team of Eric Schell, Gene
Tanimoto, Alan Williams, Xue Mei Zhou, Lianne McLean, Paul Doran, Mike
Mittman, Venu Valmeekam, Sandra Wells, Dawn Kerber, Curtis Fideler,
Joe Prosser and Kyle O'Connor.
This database is supported by
-
USDA Initiative for Future Agriculture and Food
Systems (IFAFS) #01-52100-11346 9/1/01 - 8/31/04; "An
integrated physical and expression map of barley for
Triticeae improvement" to Andris Kleinhofs, Roger P.
Wise, Rod A. Wing, Timothy J.Close, Gary J.
Muehlbauer.
-
USDA-NRI/CGP #2002-03582 9/15/02 - 9/31/05;
"BarleyBase, a prototype online database for cereal
microarrays with integrated tools for data
visualization and statistical analysis" to J.
Dickerson, Computer and Electrical Engineering; V.
Brendel, Zoology & Genetics; R. Wise, Plant
Pathology; D. Cook and D. Nettleton, Statistics; Dan
Ashlock, Mathematics.
-
USDA-CSREES North American Barley Genome Project
funds to Roger P. Wise, Daniel A. Ashlock and Julie A.
Dickerson.
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