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expression data publicly available to researchers world-wide...
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Citrus Microarray Sequence ID: Cit.11118.1.S1_s_at |
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Sequence Type
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Consensus sequence
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Probe Set Details
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Probe Sequences & Alignment
EXPRESSION DETAILS for Cit.11118.1.S1_s_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Cit.11118.1.S1_s_at
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Alignments and Assemblies
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• PlantGDB PUT assemblies
• HarvEST BLAST
• PLEXdb Blast
• TAIR Blast
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Model Genome Alignments
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None available |
| Probe Set Annotation
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Affymetrix, 2009-03-11
C37_14891 /DEF=Section:2 Forward ESTs:3 BEST NR:BAC10548.1 5e-90 cullin-like protein1 [Pisum sativum] /REP_ORG=Citrus
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Annotation via Blast
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• BLASTX UniProt: UniRef90_Q94AH6, Cullin-1 n=3 Tax=Arabidopsis RepID=CUL1_ARATH, Expect:4e-73, match=138/184. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies: TA3596_309804, Cullin 1B [Nicotiana tabacum (Common tobacco)], Expect:0, match=978/978. Blast executed on 2007-11-07 against Citrus aurantium release 2, Citrus clementina release 2, Citrus clementina x Citrus tangerina release 2, Citrus macrophylla release 2, Citrus reticulata release 2, Citrus reticulata x Citrus temple release 2, Citrus sinensis release 2, Citrus sinensis x Poncirus trifoliata release 2, Citrus unshiu release 5, Citrus x paradisi release 2, Citrus x paradisi x Poncirus trifoliata release 2 show top hits
• BLASTX NCBI Reference Sequence: XP_002314453, predicted protein [Populus trichocarpa], Expect:2e-87, match=162/184. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits
• BLASTN DFCI Orange Gene Index: TC5350, homologue to UniRef100_A7NW32 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (26%), Expect:0, match=995/952. Blast executed on 2009-09-13 against Orange 1.0 show top hits
• BLASTX Arabidopsis thaliana genome: AT4G02570.4, | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=739, Expect:7e-75, match=138/184. Blast executed on 2010-12-10 against Arabidopsis thaliana genome, TAIR release 10 show top hits
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Sequence
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Total length: 978
>Cit.11118.1.S1_s_at --
ggtacttgtaacctccttggcaaatttgaatcaagaactacagagttgattgtcacaacc
tatcaggcttctgcgttgcttttattcaattcctcagataggctgagttattcagagatc
atgacgcagttgaacttgtccgacgatgatgttgttagattgcttcattccttgtcatgt
gcaaaatataagattctcaacaaagagccaaatacaaaaaccatctctcctactgatcac
tttgagttcaattccaagtttacggacaaaatgaggagaatcaagattcctctccctcct
gtggatgagaaaaagaaggttattgaagatgttgataaggacagacgatatgccattgat
gcctcaattgtgcgcattatgaaaagtcggaaagttttggggcaccaacaattggtattg
gagtgtgtcgagcagttgggccgcatgttcaagcctgatttcaaggcaatcaaaaagagg
attgaggatcttatcactcgagactatctcgagagggacaaatctaatcccaatatgttc
aggtacttggcgtgatctagagtggttggtaatccagatgaagtgttgacatttgctgcc
cacaaagagggttagttcatggtggaactgggacaaacatatgtaaaccgccgccaggag
tgccttatctggtgattgctcagaagcagagctgtgatgcttgtacattttgctgttgcg
ccaggtgtgaggagcaggtatagatttcaaacccatgttggagaaatagttattcattcc
ttaatgtggttcagtgcaccgagagacaatgctgttctgtcttcttatttctgcaatccc
atttcgtgaattgatgtttgtttgtgatttctctttcttttataatttcttttgctgaag
aaatatgtatcttaaatctatcaaagtggtgttttgattgtaagtttataagagattgcc
tggtgaaatatctctata
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