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Cotton Gossypium raimondii Sequence ID: Gra.1899.1.S1_at |
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Sequence Type
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Consensus sequence
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Probe Set Details
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Probe Sequences & Alignment
EXPRESSION DETAILS for Gra.1899.1.S1_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Gra.1899.1.S1_at
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Alignments and Assemblies
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• PLEXdb Blast
• TAIR Blast
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Model Genome Alignments
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None available |
| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
gb:AM048818.1 /DB_XREF=gi:70663491 /GEN=stv1 /TID=Gra.1899.1 /CNT=1 /FEA=mRNA /TIER=ConsEnd /STK=0 /UG=Gra.1899 /DEF=Gossypium raimondii mRNA for sialyltransferase-like protein (stv1 gene). /PROD=sialyltransferase-like protein /REP_ORG=G. raimondii
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Annotation via Blast
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• BLASTX UniProt: UniRef90_P70277, Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 n=3 Tax=Murinae RepID=SIA7B_MOUSE, Expect:1e-12, match=68/223. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies: TA13162_29730, gb|AM048818.1;, Expect:0, match=1713/0. Blast executed on 2008-04-07 show top hits
• BLASTX NCBI Reference Sequence: XP_002306228, predicted protein [Populus trichocarpa], Expect:1e-164, match=390/270. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits
• BLASTX Arabidopsis thaliana genome: AT1G08280.1, | Symbols: | glycosyl transferase family 29 protein / sialyltransferase family protein | chr1:2608408-2609604 FORWARD, Expect:1e-123, match=398/220. Blast executed on 2010-12-10 against Arabidopsis thaliana genome, TAIR release 10 show top hits
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Sequence
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Total length: 1737
>Gra.1899.1.S1_at gb|AM048818.1;
tttaatgcttgttgcattagctgcaacactattctgtcggattgccatccgcgggggcag
cggtggtggatttgctgtttcagctgaattggagaccaccaggtccagggtcctaatcca
acccccaccaatccaaaattttaactcaactttgctcaagtttgcagcggttgatacagg
tgaagctaaatccaagcttgaaatagagcagctgctggaagggagctttgcgggtcaagg
aaggtataggacttttgcaacatggaggaggttcaatcatcatgatgtcaaagctaggaa
ttctaatgggatgccggtaatgctcaggtcccctaaattttatcggtattggttagattt
taggaggaacttacagcattgggctagaaaaagaatgttccaacctgatattatgatgga
tttagttacactagtaaaggttcctattgatagccataatggtttaatgagttcggataa
caagtataaatcttgtgctgttgtggggaatagtgggattttactgaatactgatcatgg
gaagttcattgatggtcatgaggccgtgattagattgaacaatgctaggactgagaggtt
cgaaaagaatgtggggtcgaaaaccagtatttcgtttgtaaatagcaatatactgcatct
ttgtgctaggagggatggatgtttttgtcacccttatggagggaatgttcctatggttat
gtatatctgccaaccggttcatttcatggactatttggtatgcaattcgtctcacaaggc
acctttgttgattacagatctgcgttttgatatgttgtgtgctaggattgtgaagtacta
ttcagcgaaacgatttttggaggagaccaggaaggcattgagagaatgggcttctacaca
tgatggttcgatgtttcattactcctctgggatgcaggctgttatgttagccttgggaat
ttgtgacaaagttagtatatttggctttggcaaatcgactttggcgaagcaccattatca
tactaaccagaaggctgagctccgtttacatgattatgaggcggaatatgcattttatca
tgatctggtgaagaatccacgggcaataccattcatttcggacaaattcaggttccctcc
tgtggtattctatcaatgattttggctgattggtttcttttttaattttattttgtcctt
gttttgttggtcaagactaaatcagtgtgttccatggtgtatcagtaattctgtagtgga
tagtcaaaagaaaacacaaatgctgaagatctgtgtttcatattctggacctgcactgtc
gaagatggtttagggtaataggaaatgtaaaattggaaactaagaatatgaagtaagata
tggtggattcttcatatgctttttgttgagcttttgagatgttgttctttctggtgcaat
gtttggggattcaagagtaagtccctttaaggtattgtaagcctctagaaattcaaactc
attcatctagcttatagatcaattagtatttgttttgctgtgtgtattcggatttgggtt
ctgaattagtgggttgggtcctctttagacaaatgggtccaacaaggggctgccttagac
accttcattaattgtgtactacatgcatatcatgaataacgtggtcatacattattctac
taaaaggggaatatgattgttatgatttgtgctaaaaaaaacttaaaagaaaaaaaa
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