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Fusarium Microarray Sequence ID: fg12315_at |
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Probe Set Details
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Probeset-level information from MIPS
EXPRESSION DETAILS for fg12315_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for fg12315_at
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Alignments and Assemblies
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• FGDB
• MIPS Fusarium database
• PLEXdb Blast
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Model Genome Alignments
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None available |
| Probe Set Annotation
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Affymetrix annotation, 2005-12-12
related to C.elegans dom-3 protein, Contig fg_contig_1.305 35749-34155
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Annotation via Blast
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• BLASTX UniProt: UniRef90_UPI000023D825, hypothetical protein FG07345.1 n=1 Tax=Gibberella zeae PH-1 RepID=UPI000023D825, Expect:0, match=354/368. Blast executed on 2009-07-02 against Uniref90 (July '09) show top hits
• BLASTN DFCI Fusarium verticillioides Gene Index: DR656173, similar to UniRef100_Q4I613 Cluster: Protein RAI1; n=2; Gibberella zeae|Rep: Protein RAI1 - Gibberella zeae (Fusarium graminearum), partial (13%), Expect:3e-15, match=151/112. Blast executed on 2009-09-23 against FvGI release 8.0(2008/07/01) show top hits
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Sequence
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Total length: 1107
>fg12315 related to C.elegans dom-3 protein, Contig fg_contig_1.305 35749-34155
ATGGCGGCGCGCTTTTCTATTCAACCCATTGGCCGATTTGCTGGTGAAAGCCAACCTGTC
AAAAGACCCAAGGAGTTTGCATGCTTCTCCTATGACGACAACCACGAGTTTCGTCTTGAT
GGCTCTTCTCTCAAGTACTATTACACCCCACAGCTAGGGGCAGACCTCTCCAAGGGATTT
GATACTTTTCAGAAGCTGGATGATACTGGAGATGATCATCTCGATAGCCTTCTCAAGACA
ATCGTTGCTCATGAGCAAGAGACTGGTAAAAAGATAGATGCCAATGTCGTCACCTGGAGA
GGCATGATGACCAAGATTATGGCTACCCCCTTTGATAATATGGATGGTTTCGAGATGAAT
GCTACACTATATCAAAACAACGCCTACAAGGTCGCCTCCAGGTCCAATGAGGGTAACAAC
AACAGGCGCAGAAGAGGGCCACCACTAGAAGTCATGCAGTTCTGGGGGTACAAGTTCGAA
ACCCTATCGACCCTGCCAGCACCATGGGCAGAAACCCCGCGCGAGTTTATCGAAAACCGA
GAGAATGAAGTTGTCAACAACAAAGCCCAGTACTGTTCTGTCGTCCGAACAGGTATTGGT
AAATCTGTTCTTTGCCTCGGCGGTGAAGTCGACGCCATCTGGGACTCCAAGCCTGAAGAA
AAGGGCAGTCCTATCAACTGGGTAGAGCTCAAGACATCCGCCGAGATTCGCAATACGGGA
GATATGGAGAACTTCAACCGTAAGCTGATGAAATACTGGATTCAGTCGTTTCTTCTTGGA
GTGCCGCGCATTGTTGTTGGGTTTCGCACGCGAGACGGCATTCTGGTTGAGGCAAAGGAC
ATTGAGACGCATCGCATTCCCGAGACAGTCAACTCTTATCCGAACCCCAAATGGAACGCT
GATATGTGCGTCAACTTCGCCGCCACTTTCCTAGACTGGCTATCCGCGAACATCACCGAT
GAGGGCGTTTGGAGAATAAAGCGTGAACCTCAGTCGCCCACCATTGAGCTTTTCAAGGTA
GAAGAGACAGGACACGGTGATATCCTGTCCGATGAGTTCAAGAATTGGAGAATCAAGCTG
GCTCTCGGGCCTAGCAACGAAAGCTGA
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