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Maize 100 format Whole Transcriptome Microarray Sequence ID: S2-ZM_BFb0031C03_x_st |
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Sequence Type
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CDS
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Probe Set Details
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Probe Sequences & Alignment
No expression data available for S2-ZM_BFb0031C03_x_st
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Alignments and Assemblies
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• GrainGenes Blast
• PLEXdb Blast
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Model Genome Alignments
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• Rice Alignment at Gramene (by locus name): LOC_Os08g05830.1, transaldolase, putative, expressed, Expect:1e-180, match=330/399. Blast executed on 2010-11-03 against Rice genome, MSU release 6.1 show top hits
• Brachypodium distachyon Alignment at Brachybase: Bradi3g16930.1, , Expect:1e-163, match=282/339. Blast executed on 2010-11-03 against Brachypodium distachyon genome, Brachybase release 1 show top hits
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| Probe Set Annotation
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Roger Wise Lab, 2010-10-27
S2
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Annotation via Blast
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• BLASTX UniProt: UniRef90_C5YGY0, Putative uncharacterized protein Sb07g003600 n=2 Tax=Andropogoneae RepID=C5YGY0_SORBI, Expect:0, match=358/394. Blast executed on 2011-01-04 against Uniref90 (Nov '10) show top hits
• BLASTX NCBI Reference Sequence: NP_001131550, hypothetical protein LOC100192890 [Zea mays], Expect:0, match=374/394. Blast executed on 2010-12-12 against NCBI RefSeq rel-44 show top hits
• BLASTX MSU Rice genome: LOC_Os08g05830.1, transaldolase, putative, expressed, Expect:1e-180, match=330/399. Blast executed on 2010-11-03 against Rice genome, MSU release 6.1 show top hits
• BLASTN DFCI Maize Gene Index: TC550429, , Expect:0, match=1763/1485. Blast executed on 2010-11-03 against ZmGI(DFCI) release 19 show top hits
• BLASTX Brachypodium distachyon genome: Bradi3g16930.1, , Expect:1e-163, match=282/339. Blast executed on 2010-11-03 against Brachypodium distachyon genome, Brachybase release 1 show top hits
• BLASTX Arabidopsis thaliana genome: AT1G12230.1, | Symbols: | Aldolase superfamily protein | chr1:4148050-4150708 FORWARD LENGTH=406, Expect:1e-136, match=255/406. Blast executed on 2010-11-03 against Arabidopsis thaliana genome, TAIR pre-release 10 show top hits
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Sequence
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Total length: 1485
>S2-ZM_BFb0031C03_x_st
CCCAACTGCCATGGCGCTCTCCATCTACACGCCCACCTCCTCCTCCCTCGTCCCGCCCTC
CATTCAGGAGGTCAGGCTGACTTCGCGACCGCCAAAGCCCGCGACTTTCAGCCTACGGAG
GCCACATCTGGCCGCGCGGGCCGCCGCTGGCAACGCACCCACGTCCCCGGTCCGCGAGGT
CGTCACTGAGCTCGACGCGGTCGCCGGCTTCAGCGAGATCGTGCCGGACACCGTCGTGTT
CGATGATTTCGAGAGGTTCGCACCCACGGCGGCCACAGTGAGCTCGTCGCTGCTGCTTGG
GATCACTGGGCTCCCAGACACTAAGTTCAAGAGTGCGATAGATACTGCACTGGCAGATGG
TGAGTGCAACGCACTGGAGAAGGCTGAGGACAGGATGTCCTGTTACCTCACCAAGGCTCT
TGCAAATGTTGGCGCTGAACTGGCTCATCAAGTCCCTGGGAGAGTTTCGACGGAAATAGA
TGCTCGGTTAGCTTATGACACCCAGGGCATAATCCACAGGGTACATGAACTGTTGAATCT
ATACAACCAACATGATGTCTCAACTGACCGCCTGTTATTCAAAATTCCTGCTACATGGCA
AGGCATAGAGGCCTCAAGGTTGCTTGAATCTGAAGGAATTCAAACGCATCTAACATTTGT
TTACAGTTTCGCACAAGCGGCAGCGGCAGCACAAGCTGGTGCATCTGTAGTACAAATGTT
TGTGGGCCGATTGCGGGACTGGGCAAGGCATCACTCTGGTGACCCAGAGATAGATGAAGC
TTTGAAGAATGGAGAAGATGCTGGGCTTTCTTTGGCGAAGAAAGTATATGCCTATATTCA
CAGGAATGGGTACAAAACAAAGCTGATGGCCGCTGCCATACGGAACAAGCAGGACGTATT
TAGCCTTCTGGGGATCGATTACATCATTGCACCACTGAAGATATTGCAGTCTCTGGAAGA
ATCTGTCACCGATCCCGATGTGAAGTACGGCTATGTCCCGAAGTTGACTCCTGCTATTGG
CAAGACGTACAACTTCACTGAAGAGGAGCTTGTGAAGTGGGACCAGCTGAGCCTGTCAGC
TGCCATGGGACCAGCTGCAGAAGAACTGCTTGCTTCAGGGCTAGAGGGGTACGTGAACCA
AGCACGCCGCGTTGAGGAGCTCTTTGGGAAGATCTGGCCACCTCCCAATGTTTAACAACG
GCGTTGAGAGCAATAGCAATGTGATTTGCCTGGCAGGCTCACAATGCTGCGCGGAAGACG
ATTTGCTTCTTTTTGGATAATACACGAAGCACTCCCGTGTTTACGTTGACTTGACTTGCA
GTGTGCATGTATTCTGTTTTTGTTTGTAATTCAGATGATTTGCTGGATCCATGAGAACCT
GTCGCCTGATATTCCCTGCAACTGCAATCGTCCTCGTACGTACGGCTGGCAACGGCTTCT
TGGAACATCACCACCTGAGCTGCAGTTACATGATTCCATTTATAC
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