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Maize 18k Microarray Sequence ID: Zm.1000.1.A1_at

Sequence ID: Enter a probe set ID
Sequence Type Consensus sequence
Probe Set Details Probe Sequences & Alignment
MaizeGDB Genome Browser : Mapped to B73 pseudomolecule (B73 RefGen_V2)

EXPRESSION DETAILS for Zm.1000.1.A1_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Zm.1000.1.A1_at

Alignments and Assemblies PlantGDB PUT assemblies PLEXdb Blast
Model Genome Alignments Rice Alignment at Gramene (by locus name): LOC_Os05g50960.1, polygalacturonase, putative, expressed, Expect:0, match=304/356. Blast executed on 2009-08-30 against Rice genome, TIGR release 6.1 show top hits

Brachypodium distachyon Alignment at Brachybase: Bradi2g43750.1, , Expect:1e-169, match=278/356. Blast executed on 2010-11-03 against Brachypodium distachyon genome, Brachybase release 1 show top hits

Probe Set Annotation Affymetrix annotation, 2009-03-11
gb:CK144426 /DB_XREF=gi:38687395 /DB_XREF=3530_1_11_1_A01.x_15 /TID=Zm.1000.1 /CNT=9 /FEA=mRNA /TIER=ConsEnd /STK=0 /UG=Zm.1000 /UG_TITLE=PCO140658 mRNA sequence /REP_ORG=Z. mays
Annotation via Blast BLASTX UniProt: UniRef90_A7PZL3, Probable polygalacturonase n=2 Tax=Vitis vinifera RepID=PGLR_VITVI, Expect:6e-94, match=164/347. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits

BLASTN TIGR Plant Transcript Assemblies: TA180454_4577, , Expect:0, match=1165/1165. Blast executed on 2007-10-23 against Zea mays release 5 show top hits

BLASTX NCBI Reference Sequence: NP_001149385, LOC100283011 [Zea mays], Expect:0, match=352/356. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits

BLASTX MSU Rice genome: LOC_Os05g50960.1, polygalacturonase, putative, expressed, Expect:0, match=304/356. Blast executed on 2009-08-30 against Rice genome, TIGR release 6.1 show top hits

BLASTN DFCI Maize Gene Index: TC474500, , Expect:0, match=1576/1157. Blast executed on 2009-09-13 against ZmGI(DFCI) release 19 show top hits

BLASTX Brachypodium distachyon genome: Bradi2g43750.1, , Expect:1e-169, match=278/356. Blast executed on 2010-11-03 against Brachypodium distachyon genome, Brachybase release 1 show top hits

BLASTX Arabidopsis thaliana genome: AT4G23820.1, | Symbols: | Pectin lyase-like superfamily protein | chr4:12397217-12400050 REVERSE LENGTH=445, Expect:1e-144, match=227/356. Blast executed on 2010-12-10 against Arabidopsis thaliana genome, TAIR release 10 show top hits

Sequence Total length: 1271
>Zm.1000.1.A1_at gb|CK144426
cacgggccccttcaacctcacctcccacatgacgctcttcctcgcccgcggcgccatcgt
ccgcgccacccaggacacgtcgagctggccgctcatcgacccgctgccgtcgtacgggag
agggcgcgagctgcctggcgggagatacatgagcttgatccacggccacggtctgcagga
cgtcttcatcacaggtgagaacggcaccatcgacggccaaggcggcgtgtggtgggacat
gtggaagaagcgcacgctgcccttcacgaggccgcacctgctggagctcatgtactccac
cgacgtcgtcgtctccaacctcgtcttccaggactcgccgttctggaacatccacccggt
ttactgcagcaacgtagtgatagcanacctgactgtgttggcgccgcacgactcccccaa
caccgacgggatcgatctagattcaagcagcaacgtgtgcgtcgaggactgctacatctc
cgccggcgacgacctgatntccatcaagagcgggtgggacgagtacggcgtggccttcgg
ccgcccaagctccggcatcacggtccggaggataaccgggtcgggcccgttcgccggctt
cgcggtcgggagcgagacctcgggcggcgtggaggacgtcgtggccgagcacctgagctt
ctccggcgtgggcgtcggggtncacgtgaagacnaactcgggcaggggcggcttcatccg
gaacgtcaccgtctcccaggtgaccctggacggcgcccgctacggcctgaggatcgccgg
cgacgtngggggccaccccggcgcgtcctacaacgcgagcctgctccccgtcntcgacgg
cgtggcggtcaggaacgtctggggccggaacgtccggcaggccgggctcatacggggcat
cagggactcggtcttcagtaacatttgcctctccaacgtgaagctctatggcattggcag
cgactccatcgggccgtggagatgccgagccgtcagtggcagcgcactcgacgtgcaacc
gtcgccatgtgcggagctggctagtacgtccgggacaggtttctgtacctgaatcagttt
ttccgcctcctatagcagcaataaagacgtcagcatttctccattttgttcatcacctac
agggccctttgtttctttggcaaactcttctgcgattcagctgtcactgttgaattctgc
tgttggcagaggataatctatttttaccagcagccnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnn
 
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