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expression data publicly available to researchers world-wide...
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Medicago 61k Medicago sativa Sequence ID: Msa.1033.1.S1_at |
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Sequence Type
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Consensus sequence
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Probe Set Details
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Probe Sequences & Alignment
EXPRESSION DETAILS for Msa.1033.1.S1_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Msa.1033.1.S1_at
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Alignments and Assemblies
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• PlantGDB PUT assemblies
• PLEXdb Blast
• TAIR Blast
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Model Genome Alignments
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None available |
| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
iMsa.1033 /TID=Msa.1033.1 /CNT=1 /FEA=mRNA /TIER=ConsEnd /STK=0 /NOTE=sequence(s) not in UniGene /DEF=
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Annotation via Blast
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• BLASTX UniProt: UniRef90_P93306, NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 n=45 Tax=Magnoliophyta RepID=NDUS2_ARATH, Expect:1e-88, match=159/162. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies: CO511921, Cluster: NADH dehydrogenase subunit 7; n=1; Beta vulgaris subsp. vulgaris|Rep: NADH dehydrogenase subunit 7 - Beta vulgaris subsp. vulgaris, Expect:0, match=492/492. Blast executed on 2007-10-23 against Medicago truncatula release 2 and M. sativa release 2 show top hits
• BLASTX NCBI Reference Sequence: YP_003587352, NADH dehydrogenase subunit 7 [Cucurbita pepo], Expect:3e-90, match=161/162. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits
• BLASTN DFCI Medicago truncatula Gene Index: No hits
• BLASTX Arabidopsis thaliana genome: ATMG00510.1, | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=395, Expect:9e-85, match=152/162. Blast executed on 2010-12-10 against Arabidopsis thaliana genome, TAIR release 10 show top hits
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Sequence
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Total length: 492
>Msa.1033.1.S1_at affx|gi|50316795|gb|CO511921.1|CO511921
ggggagacttttgaattgcgaggtaccattacgagctcaatatatacgagtgttattttg
tgaaataactcgaattttaaatcatttacttgctttaactactcatgctatggatgtggg
agcattaactccgttcctgtgggcttttgaggagcgggagaaattgttggaattctatga
aagagtttcgggagccaggatgcatgccagtttcatacgaccaggtggagtggcacaaga
tctgcctcttggcttatgtcgagatattgattccttcacacaacaatttgcttctcgtat
tgacgaattagaagagatgttaaccggcaaccgtatctggaaacaacgattagtggatat
cggtactgtcactgcacagcaagcaaaggattggggattcagtggtgtaatgttaagagg
ttcaggggtatgctgggatttgcgaagagcagcaccttacgatgtttatgaccaattgga
ttctgacgtacc
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