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expression data publicly available to researchers world-wide...
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Medicago 61k Medicago truncatula Sequence ID: Mtr.10012.1.S1_at |
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Sequence Type
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Consensus sequence
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Probe Set Details
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Probe Sequences & Alignment
EXPRESSION DETAILS for Mtr.10012.1.S1_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Mtr.10012.1.S1_at
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Alignments and Assemblies
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• PlantGDB PUT assemblies
• PLEXdb Blast
• TAIR Blast
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Model Genome Alignments
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None available |
| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
TC105246 /FEA=mRNA /DEF=weakly similar to UP|P79078 (P79078) Delta-9 fatty acid desaturase , partial (14%)
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Annotation via Blast
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• BLASTX UniProt: UniRef90_Q5KAM4, Stearoyl-CoA 9-desaturase, putative n=3 Tax=Filobasidiella/Cryptococcus neoformans species complex RepID=Q5KAM4_CRYNJ, Expect:4e-34, match=72/176. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies: TA36719_3880, Delta-9 fatty acid desaturase [Cryptococcus curvatus], Expect:0, match=682/682. Blast executed on 2007-10-23 against Medicago truncatula release 2 and M. sativa release 2 show top hits
• BLASTX NCBI Reference Sequence: NP_001169125, hypothetical protein LOC100382970 [Zea mays], Expect:6e-24, match=61/176. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits
• BLASTN DFCI Medicago truncatula Gene Index: TC171457, weakly similar to UniRef100_P79078 Cluster: Delta-9 fatty acid desaturase; n=1; Cryptococcus curvatus|Rep: Delta-9 fatty acid desaturase - Cryptococcus curvatus, partial (14%), Expect:0, match=682/682. Blast executed on 2010-11-03 against MtGI(DFCI) release 10 show top hits
• BLASTX Arabidopsis thaliana genome: No hits
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Sequence
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Total length: 682
>Mtr.10012.1.S1_at affx|TC105246
gagcaactttattctaatgaagtttctgcacgtggaaacttattacttgccttaatgact
cacggtgaagggtatcacaactttcatcatgaatttccgaaggatttccgaaatggatac
cgtttatttgattgggatccctcaaaatggattatatttactctacataaattaacaaac
caagttccaaaagtatctcgtgttcctgaaaatgaagttcgcaaagcaatggtaaatatg
gaaattattaaagcccaagaaaaatgtaaaaaatacgattggggaattgatccatcctca
ttgcccgtcatcacttacgagcagtataaacaaaaacaagaacaagaaggaaaagaatgg
atattagttgatgaatttgtgttggatgtttcgtcatttaaggatgatcatcctggtggt
gcaaaaattttgaagaattattatggtaaagactccactaaagcattctatggtggtttg
aatgatcattctaaagctgccaataccatgacggctatgtttagagttgccaaaatcgag
aagaatcaaaaggaagaatagaacaatatttaccaattatattttttaaacataaaatct
tgtaactttattttaaactaataatagtacaatagtgatatcatttaatcaataaaacaa
taaacaaatatttttatactat
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