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expression data publicly available to researchers world-wide...
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Soybean 61k Glycine max Sequence ID: Gma.144.1.S1_at |
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Sequence Type
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Consensus sequence
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Probe Set Details
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Probe Sequences & Alignment
View in GBrowse at Soybase
EXPRESSION DETAILS for Gma.144.1.S1_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Gma.144.1.S1_at
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Alignments and Assemblies
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• PlantGDB PUT assemblies
• PLEXdb Blast
• TAIR Blast
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Model Genome Alignments
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None available |
| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
gb:AF065435.1 /DB_XREF=gi:3851529 /TID=Gma.144.1 /CNT=1 /FEA=FLmRNA /TIER=FL /STK=1 /UG=Gma.144 /DEF=Glycine max nodulin mRNA, complete cds. /PROD=nodulin /FL=gb:AF065435.1 /REP_ORG=G. max
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Annotation via Blast
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• BLASTX UniProt: UniRef90_D2XNQ8, Flotillin-like protein 1 n=7 Tax=Medicago truncatula RepID=FLOT1_MEDTR, Expect:1e-178, match=328/478. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies: TA71850_3847, Nodulin [Glycine max (Soybean)], Expect:0, match=1594/1594. Blast executed on 2007-10-23 against Glycine max release 2 and Glycine soja release 2 show top hits
• BLASTX NCBI Reference Sequence: XP_002324888, predicted protein [Populus trichocarpa], Expect:0, match=343/477. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits
• BLASTN DFCI Soybean Gene Index: TC355040, UniRef100_Q9ZTB2 Cluster: Nodulin; n=1; Glycine max|Rep: Nodulin - Glycine max (Soybean), complete, Expect:0, match=1613/1594. Blast executed on 2010-11-03 against GmGI(DFCI) release 15 show top hits
• BLASTX Arabidopsis thaliana genome: AT5G25250.1, | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:8749774-8751430 FORWARD LENGTH=471, Expect:1e-165, match=304/471. Blast executed on 2010-12-10 against Arabidopsis thaliana genome, TAIR release 10 show top hits
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Additional Annotations
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2012-03-19 Annotation downloaded from soybase.org/AffyChip/AffyChipv3.txt, Soybase.org)
Soybean gene: Glyma06g06930.2 (evalue: 0, iden percent: 100, percent overlap: 29.58)
TAIR id: AT5G25250.1 (evalue: 0)
1st Uniref: UniRef100_Q9ZTB2 Nodulin n=1 Tax=Glycine max RepID=Q9ZTB2_SOYBN (evalue: 0, iden percent: 81.93, percent overlap: 100)
2nd Uniref: UniRef100_A5BMB0 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5BMB0_VITVI (evalue: 0, iden percent: 69.81, percent overlap: 96.52)
3rd Uniref: "UniRef100_A7P607 Chromosome chr4 scaffold_6, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7P607_VITVI" (evalue: 0, iden percent: 69.81, percent overlap: 96.52)
GO process: GO:0008150 biological_process
GO function: GO:0003674 molecular_function
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Sequence
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Total length: 1617
>Gma.144.1.S1_at gb|AF065435.1; /DEF=Glycine max nodulin mRNA, complete cds. /PROD=nodulin
cggctaattggtgtagctttttatcactgcggcagaattaagcataaagatgtacaaggt
agcaaacgcctcagaataccttgtgatcactggggttggaatcacagacataaagcttgc
aaagaaagcatgggttctcccaggccagtcatgcaccgttttcgacctctctccggtgaa
ctacaccttcgaggttcaggccatgagcgccgagaagctccctttcattctccctgcagt
cttcaccatcggtcccagagtggaggacgaagacagccttctcaaatacgccagactcct
ctcctcccacgacaagctctctcaccatgtcaaggagcttgtccagggcatcatcgaggg
tgagacgcgtgtcctcgctgcttccatgaccatggaggagattttcagaggcaccaaatc
gtttaaacaggaagtgttcgagaaggttcagctggagcttaaccagttcggccttctgat
ttacaacgccaacgttaagcaacttgttgacgtgccaggtcatgagtatttctcttactt
gggccagaagactcagatggaagctgccaaccaagccaaagttgacgtggctgaggccaa
gatgaaaggagaggttggatcgaagcagagacaagggcaaacgcttcagaatgctgccaa
gatcgatgcggaaactaagataatatcgacgcagaggcaaggagatggtaagaaggagga
aataaaggtgaggacagaggttaaggtgtttgagaatgagagagaggctgtggtggcaga
ggcaaattccgagcttgcaaagaaaaaagctgtgtgggctcaaacggcgcaggtggcaga
agtggaggccgccaaagctgtggctctcagagaagcggaattgcagagagaagttgagag
gatgaatgctcttacaaggactgagaagcttaaagctgagttcctcagcaaagcaagtgt
tgagtatgaaaccaaggtacaagaggcaaactgggagttgtacaagaagcaaaaggcggc
ggaagcaatattgtttgagaaggagaaagaggcggaagcgcaaaaagcattagcggaggc
agcatttttcagtcggcaacaagaagctgaagcagaactatttgcaaagaaaaaggaggc
agaagggcttgtggcacttgggcaggcccagggggcatatttaaagacacttcttggtgc
actgggaggcaactatggcaacctaagggactacttgatgataaatagtggcatgtttca
agagattgccaagactaatgccgatgcaattcgtggacttgagccaaagattagtatttg
gactaatggtggagatacaaatgatggctatggaagtggtgccatgaaggatgttgctgg
tgtctacaagatgttgccacctttgtttaagacagttcatgagcaaaccggtatgctgcc
acccgcttggatgggaaccctgcccgataatggttcttgagcctctgcttattaatacct
ccacatcatcaaatgtgtgctgctcgcttttcctcttttttattttgccgattggatgca
tgttttgtaaataaggtttcttcaagctcaagctaaaaaaaaaaaaaaaaaaaaaaa
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