 |
|
 |
PLEXdb is committed to making
microarray data publicly available to researchers world-wide...
|
|
 |
|
 |
|
|
|
Soybean 61k Heterodera glycines Sequence ID: HgAffx.10166.1.S1_at |
|
|
|
Sequence Type
|
Consensus sequence
|
|
Probe Set Details
|
Probe Sequences & Alignment
EXPRESSION DETAILS for HgAffx.10166.1.S1_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for HgAffx.10166.1.S1_at
|
|
Alignments and Assemblies
|
• PLEXdb Blast
|
|
Model Genome Alignments
|
None available |
|
Probe Set Annotation
|
Affymetrix annotation, 2009-03-11
gb:CB378335 /DB_XREF=gi:29127631 /DB_XREF=rq10g01.y1 /TID=HgAffx.10166.1 /CNT=4 /FEA=EST /TIER=ConsEnd /STK=0 /NOTE=sequence(s) not in UniGene /REP_ORG=H. glycines
|
|
Annotation via Blast
|
• BLASTX UniProt: UniRef90_B6VBZ2, Putative uncharacterized protein n=1 Tax=Caenorhabditis sp. PS1010 RepID=B6VBZ2_9PELO, Expect:1e-102, match=486/189. Blast executed on 2009-07-02 against Uniref90 (July '09) show top hits
• BLASTN TIGR Plant Transcript Assemblies: No hits
• BLASTX NCBI Reference Sequence: XP_001692030, seryl-trna synthetase [Chlamydomonas reinhardtii], Expect:1e-60, match=472/132. Blast executed on 2009-09-23 against NCBI RefSeq rel-35 show top hits
• BLASTN DFCI Soybean Gene Index: No hits
• BLASTX Arabidopsis thaliana genome: AT5G27470.1, | Symbols: | seryl-tRNA synthetase / serine--tRNA ligase | chr5:9695087-9697154 FORWARD, Expect:7e-54, match=451/123. Blast executed on 2009-09-01 against Arabidopsis thaliana genome, TAIR release 9 show top hits
|
|
Additional Annotations
|
|
|
Sequence
|
Total length: 881
>HgAffx.10166.1.S1_at gb|CB378335;
gaaaagggaggcgatcctgaacaaattcgcaaatctcaagtgggccgnttcgcagatgtt
tcattagtggacaaagtgatttcggcggactccgaatggcgaaaagagcgtttctttttg
gacggtttgaatcgtgcgataaaagtgtgcagtactgcgattggtgacaaaatgaagaag
aaagagtcggctggtgactccgatgccattccggaaggacaaatcaaatcacttgcagaa
ctgaaaatggatgacatcaaagaaatgaaaatttcgcaaattaaaacagtcaagggaatg
gtggacgaagaagtcagacggaccaaactcagaatggaaacgcttgagggggacagaaat
gagcatttggccaaaattgggaatttgctgcataattcggtgcccatcagtgacaatgaa
gacgaaaatcgagtcgaacggacatttggcgactgcgcaagcagaaaaagttattctcat
gttgacctcgtggtgatgtgcgacggatttgacggagagagaggcaccaatgtggcggga
ggacgaggctattttctgaaaggaccgttggtgttccttgaacaagcgctcatcgcattg
gcattgcaaatgctcaacaaaaagggcttcacgccgctttacacgcccttttttatgcgc
aaagacgtaatgcaggaggtggcacaactcagccaattcgacgaagagctttacaaggtg
accaccgcaaaaaagacggacgcagccaatgaagacggctctcccgacgagaaatatcta
atcgcaacttctgagcagccaatcgccgcctttcatcgtgacgaatggcttaacccatcg
gatttgccaatcaaatatgccggaatgtccacctgttttcg
|
|
|
| | |
