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Soybean 61k Heterodera glycines Sequence ID: HgAffx.10166.1.S1_at |
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Sequence Type
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Consensus sequence
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Probe Set Details
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Probe Sequences & Alignment
EXPRESSION DETAILS for HgAffx.10166.1.S1_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for HgAffx.10166.1.S1_at
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Alignments and Assemblies
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• PLEXdb Blast
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Model Genome Alignments
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None available |
| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
gb:CB378335 /DB_XREF=gi:29127631 /DB_XREF=rq10g01.y1 /TID=HgAffx.10166.1 /CNT=4 /FEA=EST /TIER=ConsEnd /STK=0 /NOTE=sequence(s) not in UniGene /REP_ORG=H. glycines
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Annotation via Blast
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• BLASTX UniProt: UniRef90_F1L0C4, Seryl-tRNA synthetase n=1 Tax=Ascaris suum RepID=F1L0C4_ASCSU, Expect:1e-105, match=193/293. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies: No hits
• BLASTX NCBI Reference Sequence: XP_002976614, hypothetical protein SELMODRAFT_105474 [Selaginella moellendorffii], Expect:1e-60, match=133/295. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits
• BLASTN DFCI Soybean Gene Index: No hits
• BLASTX Arabidopsis thaliana genome: AT5G27470.1, | Symbols: | seryl-tRNA synthetase / serine--tRNA ligase | chr5:9695087-9697154 FORWARD LENGTH=452, Expect:7e-54, match=123/297. Blast executed on 2010-12-10 against Arabidopsis thaliana genome, TAIR release 10 show top hits
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Additional Annotations
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Sequence
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Total length: 881
>HgAffx.10166.1.S1_at gb|CB378335;
gaaaagggaggcgatcctgaacaaattcgcaaatctcaagtgggccgnttcgcagatgtt
tcattagtggacaaagtgatttcggcggactccgaatggcgaaaagagcgtttctttttg
gacggtttgaatcgtgcgataaaagtgtgcagtactgcgattggtgacaaaatgaagaag
aaagagtcggctggtgactccgatgccattccggaaggacaaatcaaatcacttgcagaa
ctgaaaatggatgacatcaaagaaatgaaaatttcgcaaattaaaacagtcaagggaatg
gtggacgaagaagtcagacggaccaaactcagaatggaaacgcttgagggggacagaaat
gagcatttggccaaaattgggaatttgctgcataattcggtgcccatcagtgacaatgaa
gacgaaaatcgagtcgaacggacatttggcgactgcgcaagcagaaaaagttattctcat
gttgacctcgtggtgatgtgcgacggatttgacggagagagaggcaccaatgtggcggga
ggacgaggctattttctgaaaggaccgttggtgttccttgaacaagcgctcatcgcattg
gcattgcaaatgctcaacaaaaagggcttcacgccgctttacacgcccttttttatgcgc
aaagacgtaatgcaggaggtggcacaactcagccaattcgacgaagagctttacaaggtg
accaccgcaaaaaagacggacgcagccaatgaagacggctctcccgacgagaaatatcta
atcgcaacttctgagcagccaatcgccgcctttcatcgtgacgaatggcttaacccatcg
gatttgccaatcaaatatgccggaatgtccacctgttttcg
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