Soybean 61k Phytophthora sojae Sequence ID: PsAffx.7TMS-1_s_at |
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Sequence Type
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Consensus sequence
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Probe Set Details
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Probe Sequences & Alignment
EXPRESSION DETAILS for PsAffx.7TMS-1_s_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for PsAffx.7TMS-1_s_at
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Alignments and Assemblies
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• PLEXdb Blast
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Model Genome Alignments
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None available |
| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
7TMS-1 -50 to +150
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Annotation via Blast
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• BLASTX UniProt: UniRef90_F6TIH6, Uncharacterized protein n=1 Tax=Ciona intestinalis RepID=F6TIH6_CIOIN, Expect:4e-09, match=69/278. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies: No hits
• BLASTX NCBI Reference Sequence: No hits
• BLASTN DFCI Soybean Gene Index: No hits
• BLASTX Arabidopsis thaliana genome: No hits
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Additional Annotations
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Sequence
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Total length: 1248
>PsAffx.7TMS-1_s_at affx|PsAffx.7TMS-1;
gcgcactttatcgcgtagatcacttttctgatactctctgcgagtcaagcatggcgctag
tgcaggaggtgctgctgctggcggctgcctgcgtgtcctgcgcgggctgcggcttcttgc
tggccatgtggaggcgcgtggaggcccccaactacgtcagccgccgcatcgtcacgtcgc
tggggcttgcggggctcgtcaccgccgtcgccttcgccatgtccctggtggtgaacggct
ttgggcagaactacagacagcacgaaggactctgctacgcgcaggcgctgacgctgcagt
acttctacttggcgtcgtacctctggaccgcgtgcttcgccttccacctctaccagatca
ttgtcaagcggaatgagtacccggaggagttcctgtgggtgtatcgcggcgttgggtggg
ggctgcctggagtggtgctggtatatctggtgctgcgtcagctaacgggtcatctaggcg
tgggtggagcagaccgtcgatggtgctggatcgcggtccacacgacgcacgaagaagaag
gagaagacccgctcgtttggcggcgggaaggagcgctgcaacagctcctgctgttctacg
cccctgtcctctgcgtgttcgtcttcaacgtgggcgtttatcaccatatcctcaagttcc
tgtatatggatcctatggcgccacgcttccgcgacaaagtcaagatctacctcggcatct
tcttcctgtgctcgatctggggagtgatcaaccggttggtgcagctcttccgcgccgacc
acacggcgaatgagtttctaagtgtgatggagagcgtctgcgacccgttgcagccactat
tgaacgcagtggcgtacggcacgaacaagcagtcgctggagacgtacaaggaacggttct
gcccgtgctggatctactcaacgctgccgtcatccgatgaagaagagtcctctggcatcg
acgagtctccgttgctaccagtcaccgatacaccggaggccccgccgttggaccctttag
accgcgagttcggccactacttcgaccagcgcgcaccacgcagcaagccgcaccgccatc
accacacgaggcgatgaagtgaacaatagcaagaccaaatacggcttggcacgaacgctc
agacgcagcacaaactagcgcagacgtagcttaattaaacgcaggttgataacaggaatg
gcactagagctaacgccttccgacctaactgtcttgatctgtttcttt
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