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Tomato 10k Microarray Sequence ID: Les.1030.1.S1_at |
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Sequence Type
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Consensus sequence
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Probe Set Details
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Probe Sequences & Alignment
EXPRESSION DETAILS for Les.1030.1.S1_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Les.1030.1.S1_at
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Alignments and Assemblies
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• PlantGDB PUT assemblies
• PLEXdb Blast
• TAIR Blast
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Model Genome Alignments
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None available |
| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
gb:BM409800 /DB_XREF=gi:18261430 /DB_XREF=EST584127 /CLONE=cLEG50M15 /TID=Les.1030.1 /CNT=7 /FEA=EST /TIER=ConsEnd /STK=0 /UG=Les.1030 /UG_TITLE=Transcribed locus, moderately similar to NP_564250.1 Arabidopsis thaliana At1g26550 gene /REP_ORG=L. esculentum
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Annotation via Blast
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• BLASTX UniProt: UniRef90_D2VGQ1, Predicted protein (Fragment) n=1 Tax=Naegleria gruberi RepID=D2VGQ1_NAEGR, Expect:1e-17, match=42/72. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies: TA41911_4081, Cluster: Putative peptidyl-prolyl cis-trans isomerase; n=1; Gossypium hirsutum|Rep: Putative peptidyl-prolyl cis-trans isomerase - Gossypium hirsutum (Upland cotton) (Gossypium mexicanum), Expect:0, match=427/427. Blast executed on 2007-10-23 against Solanum lycopersicum release 5 show top hits
• BLASTX NCBI Reference Sequence: XP_002514732, rotamase, putative [Ricinus communis], Expect:2e-36, match=69/91. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits
• BLASTN DFCI Tomato Gene Index: TC217868, similar to UniRef100_A7DX10 Cluster: Parvulin-type peptidyl-prolyl cis/trans isomerase; n=1; Lotus japonicus|Rep: Parvulin-type peptidyl-prolyl cis/trans isomerase - Lotus japonicus, partial (97%), Expect:0, match=876/426. Blast executed on 2010-11-03 against LeGI(DFCI) release 13 show top hits
• BLASTX Arabidopsis thaliana genome: AT1G26550.1, | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr1:9171800-9172716 FORWARD LENGTH=143, Expect:4e-37, match=67/73. Blast executed on 2010-12-10 against Arabidopsis thaliana genome, TAIR release 10 show top hits
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Sequence
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Total length: 427
>Les.1030.1.S1_at gb|BM409800
cagtctngcctctctcaagttggaaaccctctctctctcaattgtcaaacaatcaaattc
tgagttgtaaagcttcagaagttatgggaaaggactccaagtctaaggattctggaagca
agggaaagggtaaacaggctgctggtggaagtgaggataatgcttcgaaaggaaaaggaa
aaggtgggaaaggagatggccttggaacctgcacatatgttaaagcaaggcatgtcttat
gtgagaagcagtcaaagattaatgaagcatacaaaatactacaggaaggctggctgaaca
acggagataaagttccaccagctgagtttgctaaggtagctgcaacttactcggaatgcc
cctcaggaaagaaaggtggggacctgggatggtttccacgtggcaagatggcaggcccat
ttcagga
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