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expression data publicly available to researchers world-wide...
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Arabidopsis ATH1 22k Microarray Sequence ID: 250434_at |
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Sequence Type
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Exemplar sequence
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Probe Set Details
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Probe Sequences & Alignment
EXPRESSION DETAILS for 250434_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for 250434_at
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Alignments and Assemblies
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• PlantGDB PUT assemblies
• PLEXdb Blast
• TAIR Blast
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Model Genome Alignments
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• Arabidopsis alignment at TAIR
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| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
histone H3 - like protein histone H3, Arabidopsis thaliana, PIR:S06250
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Annotation via Blast
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• BLASTX UniProt: UniRef90_E9IYV7, Putative uncharacterized protein (Fragment) n=1 Tax=Solenopsis invicta RepID=E9IYV7_SOLIN, Expect:2e-58, match=117/136. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies: TA26393_3702, RING-H2 finger protein ATL5F [Arabidopsis thaliana (Mouse-ear cress)], Expect:0, match=411/411. Blast executed on 2007-10-23 against TIGR TA Arabidopsis thaliana release 2 show top hits
• BLASTX NCBI Reference Sequence: XP_002892490, histone H3 [Arabidopsis lyrata subsp. lyrata], Expect:7e-60, match=119/136. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits
• BLASTN DFCI Arabidopsis thaliana Gene Index:
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Subject Sequence Description
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Expect
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Identity/Match
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Identity%
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HSP
Details
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TC396348:UniRef100_P08903 Cluster: Histone H3.2; n=1; Encephalartos altensteinii|Rep: Histone H3.2 - Encephalartos altensteinii (Altenstein's bread tree) (Cycad), complete
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0 |
1984/410
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99.8
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view
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TC397456:
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1e-150 |
739/268
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100
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view
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TC382344:UniRef100_P08903 Cluster: Histone H3.2; n=1; Encephalartos altensteinii|Rep: Histone H3.2 - Encephalartos altensteinii (Altenstein's bread tree) (Cycad), complete
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1e-108 |
668/350
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87.3
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view
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TC387542:UniRef100_P08903 Cluster: Histone H3.2; n=1; Encephalartos altensteinii|Rep: Histone H3.2 - Encephalartos altensteinii (Altenstein's bread tree) (Cycad), complete
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1e-106 |
660/347
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87.2
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view
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TC383817:UniRef100_P08903 Cluster: Histone H3.2; n=1; Encephalartos altensteinii|Rep: Histone H3.2 - Encephalartos altensteinii (Altenstein's bread tree) (Cycad), complete
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1e-106 |
724/347
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87.2
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view
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show best hit only
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• BLASTX Arabidopsis thaliana genome: AT5G65360.1, | Symbols: | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=137, Expect:1e-60, match=119/136. Blast executed on 2010-12-10 against Arabidopsis thaliana genome, TAIR release 10 show top hits
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Sequence
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Total length: 411
>250434_at at|At5g10390; histone H3 - like protein histone H3, Arabidopsis thaliana, PIR:S06250
atggctcgtactaagcaaaccgcgaggaaatccacaggaggcaaagcaccaagaaagcaa
ctcgcaaccaaggcggcaaggaaatctgctccggccaccggaggagtgaagaagccgcat
agattccgtccaggaactgttgccttgagagagatcaggaagtatcagaagagcactgag
cttctgatccgtaagcttcctttccagcgtctggttcgtgagatagctcaggatttcaag
acggatctgaggtttcagagcagtgctgttgctgctttacaagaggctgctgaggcttac
cttgttggtttgtttgaagacactaatctttgcgccattcacgctaagagggtcaccatc
atgcctaaggatatccagctcgcgaggagaatcagaggagaaagagcttga
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