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Soybean 61k Heterodera glycines Sequence ID: HgAffx.10166.1.S1_at

Sequence ID: Enter a probe set ID
Sequence Type Consensus sequence
Probe Set Details Probe Sequences & Alignment

EXPRESSION DETAILS for HgAffx.10166.1.S1_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for HgAffx.10166.1.S1_at

Alignments and Assemblies PLEXdb Blast
Model Genome Alignments None available
Probe Set Annotation Affymetrix annotation, 2009-03-11
gb:CB378335 /DB_XREF=gi:29127631 /DB_XREF=rq10g01.y1 /TID=HgAffx.10166.1 /CNT=4 /FEA=EST /TIER=ConsEnd /STK=0 /NOTE=sequence(s) not in UniGene /REP_ORG=H. glycines
Annotation via Blast BLASTX UniProt: UniRef90_F1L0C4, Seryl-tRNA synthetase n=1 Tax=Ascaris suum RepID=F1L0C4_ASCSU, Expect:1e-105, match=193/293. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits

BLASTN TIGR Plant Transcript Assemblies: No hits

BLASTX NCBI Reference Sequence: XP_002976614, hypothetical protein SELMODRAFT_105474 [Selaginella moellendorffii], Expect:1e-60, match=133/295. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits

BLASTN DFCI Soybean Gene Index: No hits

BLASTX Arabidopsis thaliana genome:
Subject Sequence Description   Expect   Identity/Match   Identity%   HSP
Details
AT5G27470.1:| Symbols: | seryl-tRNA synthetase / serine--tRNA ligase | chr5:9695087-9697154 FORWARD LENGTH=452 7e-54 123/297 41.4 view
AT1G11870.1:| Symbols: ATSRS, OVA7, SRS | Seryl-tRNA synthetase | chr1:4003895-4006556 FORWARD LENGTH=513 2e-16 67/232 28.9 view
AT1G11870.3:| Symbols: ATSRS, SRS | Seryl-tRNA synthetase | chr1:4003895-4006150 FORWARD LENGTH=403 2e-16 67/232 28.9 view
AT1G11870.2:| Symbols: ATSRS, SRS | Seryl-tRNA synthetase | chr1:4003895-4006556 FORWARD LENGTH=515 2e-16 67/232 28.9 view
show best hit only

Additional Annotations
Sequence Total length: 881
>HgAffx.10166.1.S1_at gb|CB378335;
gaaaagggaggcgatcctgaacaaattcgcaaatctcaagtgggccgnttcgcagatgtt
tcattagtggacaaagtgatttcggcggactccgaatggcgaaaagagcgtttctttttg
gacggtttgaatcgtgcgataaaagtgtgcagtactgcgattggtgacaaaatgaagaag
aaagagtcggctggtgactccgatgccattccggaaggacaaatcaaatcacttgcagaa
ctgaaaatggatgacatcaaagaaatgaaaatttcgcaaattaaaacagtcaagggaatg
gtggacgaagaagtcagacggaccaaactcagaatggaaacgcttgagggggacagaaat
gagcatttggccaaaattgggaatttgctgcataattcggtgcccatcagtgacaatgaa
gacgaaaatcgagtcgaacggacatttggcgactgcgcaagcagaaaaagttattctcat
gttgacctcgtggtgatgtgcgacggatttgacggagagagaggcaccaatgtggcggga
ggacgaggctattttctgaaaggaccgttggtgttccttgaacaagcgctcatcgcattg
gcattgcaaatgctcaacaaaaagggcttcacgccgctttacacgcccttttttatgcgc
aaagacgtaatgcaggaggtggcacaactcagccaattcgacgaagagctttacaaggtg
accaccgcaaaaaagacggacgcagccaatgaagacggctctcccgacgagaaatatcta
atcgcaacttctgagcagccaatcgccgcctttcatcgtgacgaatggcttaacccatcg
gatttgccaatcaaatatgccggaatgtccacctgttttcg
 
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