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Soybean 61k Heterodera glycines Sequence ID: HgAffx.10166.1.S1_at

Sequence ID: Enter a probe set ID
Sequence Type Consensus sequence
Probe Set Details Probe Sequences & Alignment

EXPRESSION DETAILS for HgAffx.10166.1.S1_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for HgAffx.10166.1.S1_at

Alignments and Assemblies PLEXdb Blast
Model Genome Alignments None available
Probe Set Annotation Affymetrix annotation, 2009-03-11
gb:CB378335 /DB_XREF=gi:29127631 /DB_XREF=rq10g01.y1 /TID=HgAffx.10166.1 /CNT=4 /FEA=EST /TIER=ConsEnd /STK=0 /NOTE=sequence(s) not in UniGene /REP_ORG=H. glycines
Annotation via Blast BLASTX UniProt:
Subject Sequence Description   Expect   Identity/Match   Identity%   HSP
Details
UniRef90_F1L0C4:Seryl-tRNA synthetase n=1 Tax=Ascaris suum RepID=F1L0C4_ASCSU 1e-105 193/293 65.9 view
UniRef90_B6VBZ2:Putative uncharacterized protein n=1 Tax=Caenorhabditis angaria RepID=B6VBZ2_9PELO 1e-102 189/293 64.5 view
UniRef90_E1G0Z2:Sars1 protein n=1 Tax=Loa loa RepID=E1G0Z2_LOALO 1e-101 182/293 62.1 view
UniRef90_Q18678:Probable seryl-tRNA synthetase, cytoplasmic n=5 Tax=Caenorhabditis RepID=SYSC_CAEEL 8e-98 182/293 62.1 view
UniRef90_E0VG46:Seryl-tRNA synthetase, putative n=1 Tax=Pediculus humanus corporis RepID=E0VG46_PEDHC 3e-96 170/293 58 view
show best hit only

BLASTN TIGR Plant Transcript Assemblies: No hits

BLASTX NCBI Reference Sequence: XP_002976614, hypothetical protein SELMODRAFT_105474 [Selaginella moellendorffii], Expect:1e-60, match=133/295. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits

BLASTN DFCI Soybean Gene Index: No hits

BLASTX Arabidopsis thaliana genome: AT5G27470.1, | Symbols: | seryl-tRNA synthetase / serine--tRNA ligase | chr5:9695087-9697154 FORWARD LENGTH=452, Expect:7e-54, match=123/297. Blast executed on 2010-12-10 against Arabidopsis thaliana genome, TAIR release 10 show top hits

Additional Annotations
Sequence Total length: 881
>HgAffx.10166.1.S1_at gb|CB378335;
gaaaagggaggcgatcctgaacaaattcgcaaatctcaagtgggccgnttcgcagatgtt
tcattagtggacaaagtgatttcggcggactccgaatggcgaaaagagcgtttctttttg
gacggtttgaatcgtgcgataaaagtgtgcagtactgcgattggtgacaaaatgaagaag
aaagagtcggctggtgactccgatgccattccggaaggacaaatcaaatcacttgcagaa
ctgaaaatggatgacatcaaagaaatgaaaatttcgcaaattaaaacagtcaagggaatg
gtggacgaagaagtcagacggaccaaactcagaatggaaacgcttgagggggacagaaat
gagcatttggccaaaattgggaatttgctgcataattcggtgcccatcagtgacaatgaa
gacgaaaatcgagtcgaacggacatttggcgactgcgcaagcagaaaaagttattctcat
gttgacctcgtggtgatgtgcgacggatttgacggagagagaggcaccaatgtggcggga
ggacgaggctattttctgaaaggaccgttggtgttccttgaacaagcgctcatcgcattg
gcattgcaaatgctcaacaaaaagggcttcacgccgctttacacgcccttttttatgcgc
aaagacgtaatgcaggaggtggcacaactcagccaattcgacgaagagctttacaaggtg
accaccgcaaaaaagacggacgcagccaatgaagacggctctcccgacgagaaatatcta
atcgcaacttctgagcagccaatcgccgcctttcatcgtgacgaatggcttaacccatcg
gatttgccaatcaaatatgccggaatgtccacctgttttcg
 
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