Soybean 61k Phytophthora sojae Sequence ID: PsAffx.7TMS-1_s_at |
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Sequence Type
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Consensus sequence
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Probe Set Details
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Probe Sequences & Alignment
EXPRESSION DETAILS for PsAffx.7TMS-1_s_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for PsAffx.7TMS-1_s_at
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Alignments and Assemblies
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• PLEXdb Blast
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Model Genome Alignments
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None available |
| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
7TMS-1 -50 to +150
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Annotation via Blast
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• BLASTX UniProt:
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Subject Sequence Description
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Expect
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Identity/Match
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Identity%
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HSP
Details
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UniRef90_F6TIH6:Uncharacterized protein n=1 Tax=Ciona intestinalis RepID=F6TIH6_CIOIN
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4e-09 |
69/278
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24.8
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view
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UniRef90_O04714:G-protein coupled receptor 1 n=3 Tax=Brassicaceae RepID=GCR1_ARATH
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9e-09 |
66/297
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22.2
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view
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UniRef90_P35352:Cyclic AMP receptor 3 n=1 Tax=Dictyostelium discoideum RepID=CAR3_DICDI
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1e-07 |
61/236
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25.8
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view
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UniRef90_Q9TX43:Cyclic AMP receptor 4 n=1 Tax=Dictyostelium discoideum RepID=CAR4_DICDI
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1e-07 |
50/232
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21.6
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view
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UniRef90_C3ZDH7:Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZDH7_BRAFL
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2e-07 |
66/278
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23.7
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view
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show best hit only
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• BLASTN TIGR Plant Transcript Assemblies: No hits
• BLASTX NCBI Reference Sequence: No hits
• BLASTN DFCI Soybean Gene Index: No hits
• BLASTX Arabidopsis thaliana genome: No hits
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Additional Annotations
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Sequence
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Total length: 1248
>PsAffx.7TMS-1_s_at affx|PsAffx.7TMS-1;
gcgcactttatcgcgtagatcacttttctgatactctctgcgagtcaagcatggcgctag
tgcaggaggtgctgctgctggcggctgcctgcgtgtcctgcgcgggctgcggcttcttgc
tggccatgtggaggcgcgtggaggcccccaactacgtcagccgccgcatcgtcacgtcgc
tggggcttgcggggctcgtcaccgccgtcgccttcgccatgtccctggtggtgaacggct
ttgggcagaactacagacagcacgaaggactctgctacgcgcaggcgctgacgctgcagt
acttctacttggcgtcgtacctctggaccgcgtgcttcgccttccacctctaccagatca
ttgtcaagcggaatgagtacccggaggagttcctgtgggtgtatcgcggcgttgggtggg
ggctgcctggagtggtgctggtatatctggtgctgcgtcagctaacgggtcatctaggcg
tgggtggagcagaccgtcgatggtgctggatcgcggtccacacgacgcacgaagaagaag
gagaagacccgctcgtttggcggcgggaaggagcgctgcaacagctcctgctgttctacg
cccctgtcctctgcgtgttcgtcttcaacgtgggcgtttatcaccatatcctcaagttcc
tgtatatggatcctatggcgccacgcttccgcgacaaagtcaagatctacctcggcatct
tcttcctgtgctcgatctggggagtgatcaaccggttggtgcagctcttccgcgccgacc
acacggcgaatgagtttctaagtgtgatggagagcgtctgcgacccgttgcagccactat
tgaacgcagtggcgtacggcacgaacaagcagtcgctggagacgtacaaggaacggttct
gcccgtgctggatctactcaacgctgccgtcatccgatgaagaagagtcctctggcatcg
acgagtctccgttgctaccagtcaccgatacaccggaggccccgccgttggaccctttag
accgcgagttcggccactacttcgaccagcgcgcaccacgcagcaagccgcaccgccatc
accacacgaggcgatgaagtgaacaatagcaagaccaaatacggcttggcacgaacgctc
agacgcagcacaaactagcgcagacgtagcttaattaaacgcaggttgataacaggaatg
gcactagagctaacgccttccgacctaactgtcttgatctgtttcttt
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