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Medicago 61k Sinorhizobium meliloti Sequence ID: Sme.1888.1.S1_at

Sequence ID: Enter a probe set ID
Sequence Type Consensus sequence
Probe Set Details Probe Sequences & Alignment

EXPRESSION DETAILS for Sme.1888.1.S1_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Sme.1888.1.S1_at

Alignments and Assemblies PLEXdb Blast
Model Genome Alignments None available
Probe Set Annotation Affymetrix annotation, 2009-03-11
TIGR|NT01SMB0150 /FEA=mRNA /DEF=D-isomer specific 2-hydroxyacid dehydrogenases family protein {Sinorhizobium meliloti 1021}
Annotation via Blast BLASTX UniProt: UniRef90_G4RQ12, Lactate dehydrogenase and related dehydrogenases n=1 Tax=Thermoproteus tenax Kra 1 RepID=G4RQ12_THETE, Expect:3e-36, match=97/259. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits

BLASTN TIGR Plant Transcript Assemblies: No hits

BLASTX NCBI Reference Sequence: XP_002978650, hypothetical protein SELMODRAFT_109271 [Selaginella moellendorffii], Expect:2e-48, match=118/304. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits

BLASTN DFCI Medicago truncatula Gene Index: No hits

BLASTX Arabidopsis thaliana genome:
Subject Sequence Description   Expect   Identity/Match   Identity%   HSP
Details
AT1G79870.1:| Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:30044794-30045851 FORWARD LENGTH=314 7e-47 113/308 36.7 view
AT1G79870.2:| Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:30044794-30045851 FORWARD LENGTH=295 2e-40 107/308 34.7 view
AT2G45630.2:| Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr2:18796000-18797089 FORWARD LENGTH=339 3e-37 92/259 35.5 view
AT1G12550.1:| Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:4274649-4275831 FORWARD LENGTH=324 3e-33 85/247 34.4 view
AT4G34200.1:| Symbols: EDA9 | D-3-phosphoglycerate dehydrogenase | chr4:16374041-16376561 REVERSE LENGTH=604 6e-20 64/238 26.9 view
show best hit only

Sequence Total length: 933
>Sme.1888.1.S1_at affx|TIGR|NT01SMB0150
atgacgatgctccgggacatcaccatccttcaggccgccgagctgccggaaaagaccgat
ctggaactgaaggaaaccttcaataccgtccggctgccgagggatgcctcggcgatcggg
ccgtttctttccgagtacggagcgcgtattcgcggcatcgccgtcaggcacgcccatatc
gatgcggccatgctcgaccgcctgccggcgctggagatcatctccagctacagcgccggt
ctcgacggcatcgatgtcgagaccgcgcatgcccgtggcgtcgtcgtccgcaacacgtcg
aagatccttgccgaggatgtcgccgatcttgcgcttgcactgagcatttcggccacgcgc
ggcctcatgcgcggccacgatttcgtgcgcgagggcaagtggggcgagagcgccttcccg
ctcggccgctcgctgagatcgatgaagacggggatcgtcgggcttggacatatcggctcg
gcggtcgccgcccggctgagcgtgatgggagcgccgaccgcctattacggcccgagacgg
aagcctgtcgaccttccctacttcgacggcatcggggcgctcgcggcctgggccgatctc
ctgatcgtcacctgtcctgcgagtcccgagacgatcggcctcgtcaatgccgccgtgctc
gcgagccttggctcggaaggctatctggtgaacgtctcgcgcggcacgatcgtcgacgaa
caggcgctcatcacggcgctggccggaaacgggatcgccggcgtggccctcgacgtcttt
gagaaggagcccttcgtcccggaagcgctccgcaccgacccgcgcgtcgtcctgtcgccg
cacatgggtagcggcacgcgcgagacgcggcaacagatgggcgacagcatggtcgccgca
ttggtggagcatttcgagagccgaagcgcgtga
 
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