 |
|
 |
PLEXdb is committed to making
expression data publicly available to researchers world-wide...
|
|
 |
|
 |
|
|
|
Medicago 61k Sinorhizobium meliloti Sequence ID: Sme.1888.1.S1_at |
|
|
|
Sequence Type
|
Consensus sequence
|
|
Probe Set Details
|
Probe Sequences & Alignment
EXPRESSION DETAILS for Sme.1888.1.S1_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Sme.1888.1.S1_at
|
|
Alignments and Assemblies
|
• PLEXdb Blast
|
|
Model Genome Alignments
|
None available |
| Probe Set Annotation
|
Affymetrix annotation, 2009-03-11
TIGR|NT01SMB0150 /FEA=mRNA /DEF=D-isomer specific 2-hydroxyacid dehydrogenases family protein {Sinorhizobium meliloti 1021}
|
|
Annotation via Blast
|
• BLASTX UniProt:
|
Subject Sequence Description
|
Expect
|
Identity/Match
|
Identity%
|
HSP
Details
|
|
UniRef90_G4RQ12:Lactate dehydrogenase and related dehydrogenases n=1 Tax=Thermoproteus tenax Kra 1 RepID=G4RQ12_THETE
|
3e-36 |
97/259
|
37.5
|
view
|
|
UniRef90_A4YDD1:Glyoxylate reductase n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YDD1_METS5
|
2e-34 |
88/254
|
34.6
|
view
|
|
UniRef90_F4G0V8:Glyoxylate reductase n=1 Tax=Metallosphaera cuprina Ar-4 RepID=F4G0V8_METCR
|
3e-33 |
86/255
|
33.7
|
view
|
|
UniRef90_F4HNC3:Glyoxylate reductase n=1 Tax=Pyrococcus sp. NA2 RepID=F4HNC3_PYRSN
|
6e-33 |
102/314
|
32.5
|
view
|
|
UniRef90_Q8ZXX8:D-3-phosphoglycerate dehydrogenase (SerA) n=1 Tax=Pyrobaculum aerophilum str. IM2 RepID=Q8ZXX8_PYRAE
|
1e-32 |
94/258
|
36.4
|
view
|
|
show best hit only
|
• BLASTN TIGR Plant Transcript Assemblies: No hits
• BLASTX NCBI Reference Sequence: XP_002978650, hypothetical protein SELMODRAFT_109271 [Selaginella moellendorffii], Expect:2e-48, match=118/304. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits
• BLASTN DFCI Medicago truncatula Gene Index: No hits
• BLASTX Arabidopsis thaliana genome: AT1G79870.1, | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:30044794-30045851 FORWARD LENGTH=314, Expect:7e-47, match=113/308. Blast executed on 2010-12-10 against Arabidopsis thaliana genome, TAIR release 10 show top hits
|
|
Sequence
|
Total length: 933
>Sme.1888.1.S1_at affx|TIGR|NT01SMB0150
atgacgatgctccgggacatcaccatccttcaggccgccgagctgccggaaaagaccgat
ctggaactgaaggaaaccttcaataccgtccggctgccgagggatgcctcggcgatcggg
ccgtttctttccgagtacggagcgcgtattcgcggcatcgccgtcaggcacgcccatatc
gatgcggccatgctcgaccgcctgccggcgctggagatcatctccagctacagcgccggt
ctcgacggcatcgatgtcgagaccgcgcatgcccgtggcgtcgtcgtccgcaacacgtcg
aagatccttgccgaggatgtcgccgatcttgcgcttgcactgagcatttcggccacgcgc
ggcctcatgcgcggccacgatttcgtgcgcgagggcaagtggggcgagagcgccttcccg
ctcggccgctcgctgagatcgatgaagacggggatcgtcgggcttggacatatcggctcg
gcggtcgccgcccggctgagcgtgatgggagcgccgaccgcctattacggcccgagacgg
aagcctgtcgaccttccctacttcgacggcatcggggcgctcgcggcctgggccgatctc
ctgatcgtcacctgtcctgcgagtcccgagacgatcggcctcgtcaatgccgccgtgctc
gcgagccttggctcggaaggctatctggtgaacgtctcgcgcggcacgatcgtcgacgaa
caggcgctcatcacggcgctggccggaaacgggatcgccggcgtggccctcgacgtcttt
gagaaggagcccttcgtcccggaagcgctccgcaccgacccgcgcgtcgtcctgtcgccg
cacatgggtagcggcacgcgcgagacgcggcaacagatgggcgacagcatggtcgccgca
ttggtggagcatttcgagagccgaagcgcgtga
|
|
|
| | |
