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Medicago 61k Sinorhizobium meliloti Sequence ID: Sme.1888.1.S1_at |
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Sequence Type
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Consensus sequence
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Probe Set Details
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Probe Sequences & Alignment
EXPRESSION DETAILS for Sme.1888.1.S1_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Sme.1888.1.S1_at
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Alignments and Assemblies
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• PLEXdb Blast
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Model Genome Alignments
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None available |
| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
TIGR|NT01SMB0150 /FEA=mRNA /DEF=D-isomer specific 2-hydroxyacid dehydrogenases family protein {Sinorhizobium meliloti 1021}
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Annotation via Blast
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• BLASTX UniProt: UniRef90_G4RQ12, Lactate dehydrogenase and related dehydrogenases n=1 Tax=Thermoproteus tenax Kra 1 RepID=G4RQ12_THETE, Expect:3e-36, match=97/259. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies: No hits
• BLASTX NCBI Reference Sequence:
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Subject Sequence Description
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Expect
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Identity/Match
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Identity%
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HSP
Details
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XP_002978650:hypothetical protein SELMODRAFT_109271 [Selaginella moellendorffii]
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2e-48 |
118/304
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38.8
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view
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XP_002984586:hypothetical protein SELMODRAFT_156743 [Selaginella moellendorffii]
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3e-48 |
118/304
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38.8
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view
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XP_002889322:oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata]
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4e-46 |
113/308
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36.7
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view
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NP_178105:oxidoreductase family protein [Arabidopsis thaliana]
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7e-46 |
113/308
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36.7
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view
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NP_001042479:Os01g0228600 [Oryza sativa Japonica Group]
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1e-45 |
104/249
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41.8
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view
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show best hit only
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• BLASTN DFCI Medicago truncatula Gene Index: No hits
• BLASTX Arabidopsis thaliana genome: AT1G79870.1, | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:30044794-30045851 FORWARD LENGTH=314, Expect:7e-47, match=113/308. Blast executed on 2010-12-10 against Arabidopsis thaliana genome, TAIR release 10 show top hits
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Sequence
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Total length: 933
>Sme.1888.1.S1_at affx|TIGR|NT01SMB0150
atgacgatgctccgggacatcaccatccttcaggccgccgagctgccggaaaagaccgat
ctggaactgaaggaaaccttcaataccgtccggctgccgagggatgcctcggcgatcggg
ccgtttctttccgagtacggagcgcgtattcgcggcatcgccgtcaggcacgcccatatc
gatgcggccatgctcgaccgcctgccggcgctggagatcatctccagctacagcgccggt
ctcgacggcatcgatgtcgagaccgcgcatgcccgtggcgtcgtcgtccgcaacacgtcg
aagatccttgccgaggatgtcgccgatcttgcgcttgcactgagcatttcggccacgcgc
ggcctcatgcgcggccacgatttcgtgcgcgagggcaagtggggcgagagcgccttcccg
ctcggccgctcgctgagatcgatgaagacggggatcgtcgggcttggacatatcggctcg
gcggtcgccgcccggctgagcgtgatgggagcgccgaccgcctattacggcccgagacgg
aagcctgtcgaccttccctacttcgacggcatcggggcgctcgcggcctgggccgatctc
ctgatcgtcacctgtcctgcgagtcccgagacgatcggcctcgtcaatgccgccgtgctc
gcgagccttggctcggaaggctatctggtgaacgtctcgcgcggcacgatcgtcgacgaa
caggcgctcatcacggcgctggccggaaacgggatcgccggcgtggccctcgacgtcttt
gagaaggagcccttcgtcccggaagcgctccgcaccgacccgcgcgtcgtcctgtcgccg
cacatgggtagcggcacgcgcgagacgcggcaacagatgggcgacagcatggtcgccgca
ttggtggagcatttcgagagccgaagcgcgtga
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