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expression data publicly available to researchers world-wide...
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Wheat 61k Microarray Sequence ID: Ta.10069.1.S1_at |
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Sequence Type
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Consensus sequence
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Probe Set Details
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Probe Sequences & Alignment
EXPRESSION DETAILS for Ta.10069.1.S1_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Ta.10069.1.S1_at
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Alignments and Assemblies
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• PlantGDB PUT assemblies
• GrainGenes Blast
• PLEXdb Blast
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Model Genome Alignments
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• Rice Alignment at Gramene (by locus name): LOC_Os01g47410.2, aspartic proteinase oryzasin-1 precursor, putative, expressed, Expect:0, match=315/408. Blast executed on 2009-08-30 against Rice genome, TIGR release 6.1 show top hits
• Brachypodium distachyon Alignment at Brachybase: Bradi2g16160.1, , Expect:0, match=298/408. Blast executed on 2010-11-03 against Brachypodium distachyon genome, Brachybase release 1 show top hits
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| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
gb:BJ233195 /DB_XREF=gi:20050592 /DB_XREF=BJ233195 /CLONE=whe3k23 /TID=Ta.10069.1 /CNT=21 /FEA=EST /TIER=ConsEnd /STK=2 /UG=Ta.10069 /UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172655.1 (A.thaliana) putative aspartic proteinase (Arabidopsis thaliana)
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Annotation via Blast
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• BLASTX UniProt: UniRef90_P42210, Phytepsin n=3 Tax=Pooideae RepID=ASPR_HORVU, Expect:0, match=298/408. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies:
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Subject Sequence Description
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Expect
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Identity/Match
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Identity%
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HSP
Details
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TA52521_4565:Putative (1-4)-beta-mannan endohydrolase [Oryza sativa (japonica cultivar-group)]
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0 |
993/993
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99.9
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view
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TA67278_4565:Aspartic proteinase [Triticum aestivum (Wheat)]
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0 |
1118/1116
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84.7
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view
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TA50649_4565:Aspartic proteinase [Triticum aestivum (Wheat)]
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0 |
860/861
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97.7
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view
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TA67282_4565:Aspartic proteinase [Triticum aestivum (Wheat)]
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0 |
870/871
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86.1
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view
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TA50049_4565:Aspartic proteinase [Triticum aestivum (Wheat)]
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0 |
599/600
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99.5
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view
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show best hit only
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• BLASTX NCBI Reference Sequence: NP_001043786, Os01g0663400 [Oryza sativa Japonica Group], Expect:0, match=315/408. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits
• BLASTX MSU Rice genome: LOC_Os01g47410.2, aspartic proteinase oryzasin-1 precursor, putative, expressed, Expect:0, match=315/408. Blast executed on 2009-08-30 against Rice genome, TIGR release 6.1 show top hits
• BLASTN DFCI Wheat Gene Index: TC382510, similar to UniRef100_P42210 Cluster: Phytepsin precursor (Aspartic proteinase) [Contains: Phytepsin 32 kDa subunit; Phytepsin 29 kDa subunit; Phytepsin 16 kDa subunit; Phytepsin 11 kDa subunit]; n=1; Hordeum vulgare|Rep: Phytepsin precursor (Aspartic prot, Expect:0, match=2296/992. Blast executed on 2010-11-03 against TaGI(DFCI) release 12 show top hits
• BLASTX Brachypodium distachyon genome: Bradi2g16160.1, , Expect:0, match=298/408. Blast executed on 2010-11-03 against Brachypodium distachyon genome, Brachybase release 1 show top hits
• BLASTX Arabidopsis thaliana genome: AT1G11910.1, | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=507, Expect:1e-165, match=263/408. Blast executed on 2010-12-10 against Arabidopsis thaliana genome, TAIR release 10 show top hits
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Sequence
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Total length: 1753
>Ta.10069.1.S1_at gb|BJ233195;
gtggtctgctcctcttccggtctcacttcatcggtattctctctctctctgtaatttgca
gctncgcggcgcaaccatgggaactggccgcctcgtgttccacctcctcctcctctccaa
cgtgctcctccatgccctcctcgccacgcccgcggagggccttgtccgcatcgcgctgaa
gaagcgaccagtcgacgagaacggcgtcgtcctcgtcgctggccgnctcaccggagatga
cgccgaggcaaagggccacgtcgtggcactgaagaactaccacaacgctcagtaccacgg
cgagatcggcatcggaacgccgccgcagaancttcaccgtcatcttcgacacaggcagct
ccaacctctgggtgccctcctccaagtgcttcctctcgattgcatgctacttccatgcga
gctacaaggccaagcggtccagcacgtacaagaagaatggaaaaatagttgcaattcagt
atggaactggtgcaatttctggctatgttagccaggacaatgtgcaagttggtgatgtan
ttgtgaaaaatcaggattttattgaagctaccagggaaccaagtattacttttatggttg
caaaatttgatggcatttttggtcttgggtttaaagaaatctcgaaaggtgatgttgtac
ctgtctggtataacatggttagccaaggcctagttagtagccctattttctcattgtggt
tgaacagacatgccggtgaagggcaagggggagaaattgtgtttggaggaattgatccta
atcatcataacggagatcatacatatgtccctgttactaggaagggatactggcagtttg
atatgggtgatgtcttgattggaggaaattccacaggattatgtgcgtctcgctgtgcag
ctatagcagattctggaacttcattgctttctggtcccacggcgataattactcaaataa
atgaaaagatcggtgcacctggggtagtcagccaagagtgcaaggccgttgtttctcagt
atgggcaacggatcctanatctgctgttaaaggagatggatccatcaaaaatatgctctt
tagtcggtctatgtactccagatggaacacaaggtgtaagggctggtagtcgaagtgtgc
tagatcatgaaggtgggagatcaaatgatgtcatgtgccatgcttgtgagatggctgttg
tatggatgacgaaccaacttgcaaagaatcaaactcaggatcttatttttaagtacatta
atcagctatgtgaccgtattcctagccctatgggagaatcatctgtggactgcggcagac
ttgcatccatgcctgacatcgctttctccatcgggggcaaacagtttgtgctgacaccag
agcaatatatcctgaagatcggtgagggggatgctacccagtgcatcagcggattcacgg
ccatggacattcctcgtccccgtggccctctctggatcctgggcgatatattcatgggag
cctaccataccgtcttcgactatggcaacatgaagattgggttcgcgaaggcggcatagg
gttcccccgtggtgggcggatgagccgcagagctgtctaatcttcaggtcggtttggtct
tgggcatgcaaagcatgtgtgtgcatatgttacatgcttaataatgctcgtatgatccga
gataataataaacctgtctgttatgatttgtccaatataatgaggcaggctttcatactc
annannnannggc
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