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PLEXdb Blast
Map fasta sequences or probe sets to microarrays in PLEXdb using Blast. The search engine is provided by
NCBI BLAST
. For more information on blast, see the NCBI
Blast tutorials
. For more information about this tool click
here
.
Query sequence:
gene list
Select a gene list
Guest: BLAST (2009-05-13 10:31:22) 0513
Guest: BLAST (2009-02-09 00:33:15) a
Guest: BLAST (2009-05-28 09:11:22) ARF18
Guest: BLAST (2009-04-28 16:47:16) Control plate 6 against arabidopsis
Guest: BLAST (2009-06-26 17:51:00) DMC1
Guest: BLAST (2009-02-25 14:54:26) DMC1A
Guest: BLAST (2009-06-26 17:51:49) DMC1B
Guest: BLAST (2009-06-26 17:52:38) DMC1D
Guest: BLAST (2009-05-13 05:32:10) estExt_fgenesh4_pg.C_LG_IX1426
Guest: BLAST (2009-05-13 05:33:13) estExt_fgenesh4_pm.C_LG_I0069
Guest: BLAST (2009-05-13 05:34:39) estExt_Genewise1_v1.C_700585
Guest: BLAST (2009-05-13 05:35:44) estExt_Genewise1_v1.C_LG_XV2139
Guest: BLAST (2009-05-27 06:42:01) FFH
Guest: BLAST (2009-05-13 05:31:06) gw1.I.9045.1
Guest: BLAST (2009-04-26 23:42:04) HvC16
Guest: BLAST (2009-06-19 08:04:08) OsGT blast
Guest: BLAST (2009-04-30 16:25:25) plate6
Guest: BLAST (2009-06-26 17:53:18) RAD51A
Guest: BLAST (2009-06-26 17:53:57) RAD51B
Guest: BLAST (2009-06-26 17:54:30) RAD51D
Guest: BLAST (2009-06-12 15:04:31) rice mito
Guest: BLAST (2009-06-12 15:23:50) rice-wheat mito
Guest: BLAST (2009-03-14 10:18:59) Vitis bzip vs Vitis PlexDb
Guest: COMBINE (2009-06-30 12:04:34) asa
Guest: FOLD CHANGE (2009-03-16 13:50:21) Mla6.9472 8F
Guest: IMPORT (2009-02-03 10:18:38) 1 d up 2 fold
Guest: IMPORT (2009-01-29 17:10:56) 1 d up-regulaged in rice
Guest: IMPORT (2009-03-27 16:05:08) 123
Guest: IMPORT (2009-05-19 05:28:32) 77t6
Guest: IMPORT (2009-04-28 13:43:44) ABpmuniq
Guest: IMPORT (2009-03-01 23:45:30) all_3_downreg
Guest: IMPORT (2009-02-19 00:23:54) ASV_all_downreg
Guest: IMPORT (2009-02-19 00:19:10) ASV_all_upreg
Guest: IMPORT (2009-02-18 03:40:27) asv_downreg
Guest: IMPORT (2009-02-18 03:26:55) asv_upreg
Guest: IMPORT (2009-02-18 03:33:02) asv_upreg1
Guest: IMPORT (2009-02-19 23:42:24) ASV_very_significant
Guest: IMPORT (2009-03-04 22:06:22) Chr9-312
Guest: IMPORT (2009-06-04 07:43:33) ChWWPN05_UP
Guest: IMPORT (2009-04-10 16:42:45) dnDOWNpm
Guest: IMPORT (2009-04-08 18:52:48) DOWNin
Guest: IMPORT (2009-04-08 21:09:32) DOWNinAM
Guest: IMPORT (2009-04-08 22:05:42) DOWNinPM
Guest: IMPORT (2009-01-27 03:07:28) downreg
Guest: IMPORT (2009-04-10 18:09:06) duppm
Guest: IMPORT (2009-05-29 13:55:58) guest_grape_1
Guest: IMPORT (2009-01-24 18:01:23) import test 1
Guest: IMPORT (2009-04-28 09:35:23) mbuniq
Guest: IMPORT (2009-07-01 16:16:16) my genes
Guest: IMPORT (2009-02-05 11:42:32) no match for rice ID
Guest: IMPORT (2009-03-01 23:54:13) only_arsenic_downreg
Guest: IMPORT (2009-03-31 22:24:11) ProbeID sub1100
Guest: IMPORT (2009-03-01 23:28:42) probe_id_3_common_upreg
Guest: IMPORT (2009-06-08 11:32:02) random grape
Guest: IMPORT (2009-06-25 21:07:44) SPLs
Guest: IMPORT (2009-06-25 21:10:21) SPLs1
Guest: IMPORT (2009-03-31 22:16:28) Sub1100
Guest: IMPORT (2009-05-04 10:34:19) topUPamwp
Guest: IMPORT (2009-05-04 10:37:16) topUPamwp1
Guest: IMPORT (2009-05-01 23:37:02) tt8 experiment
Guest: IMPORT (2009-04-08 21:13:55) unDOiAM
Guest: IMPORT (2009-04-20 13:43:30) uniqDNIpm
Guest: IMPORT (2009-04-20 13:28:19) uniqDNPpm
Guest: IMPORT (2009-04-20 14:11:52) uniqwkam
Guest: IMPORT (2009-04-20 14:19:15) uniqwkiam
Guest: IMPORT (2009-04-16 17:39:09) un_DownAM
Guest: IMPORT (2009-02-18 11:47:43) Up then down, but higher than base line, q value is not limitted
Guest: IMPORT (2009-04-09 09:37:44) UPinAM
Guest: IMPORT (2009-04-09 09:48:14) UPinPM
Guest: IMPORT (2009-03-01 23:48:52) upreg_only_arsenic
Guest: IMPORT (2009-01-27 02:57:30) upreg_rice
Guest: IMPORT (2009-02-25 04:18:35) Vinitchan
Guest: IMPORT (2009-04-10 16:37:56) wkDOWNam
Guest: IMPORT (2009-04-10 15:35:08) wkupAM
Guest: IMPORT (2009-03-26 16:47:13) workshop 1
Guest: IMPORT (2009-03-26 16:45:22) workshop 11
Guest: IMPORT (2009-04-20 15:45:12) xyz
Guest: MPT (2009-03-12 04:06:26) maize18k_136-AT
Guest: MPT (2009-05-04 21:52:39) ww
Guest: MPT (2009-03-12 03:51:26) Zm136-At85
Guest: MPT (2009-03-12 04:01:30) Zm136-At85_2
Guest: MPT (2009-03-12 04:03:34) Zm136-At85_3
Guest: PROFILE NEIGHBORS (2009-06-11 04:07:54) AP-1-like
Guest: PROFILE NEIGHBORS (2009-06-16 06:53:42) coexpressed with FTase Contig4020_at
Guest: PROFILE NEIGHBORS (2009-01-08 14:07:02) RW 12219 neighbors
Guest: PROFILE NEIGHBORS (2009-05-16 13:15:51) vv5 example
Guest: TREATMENT_EXPRESSION_GENES (2009-07-02 17:41:00) all
probe set IDs
From
Arabidopsis ATH1 22k
Barley1 22k
Citrus
Cotton
Fusarium
Grape Vitis vinifera 16k
Maize 18k
Maize 58k NSF Array
Maize Cornchip0 8k
Medicago 61k
Poplar 61k
Rice 57k
Soybean 61k
Sugar Cane 8k
Tomato 10k
Wheat 61k
FASTA sequence
Upload file
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Microarray Platform:
Arabidopsis ATH1 22k
Barley1 22k
Citrus
Cotton
Fusarium
Grape Vitis vinifera 16k
Maize 18k
Maize 58k NSF Array
Maize Cornchip0 8k
Medicago 61k
Poplar 61k
Rice 57k
Soybean 61k
Sugar Cane 8k
Tomato 10k
Wheat 61k
BLAST Type:
Standard nucleotide-nucleotide BLAST [blastn]
Protein query - Translated database [tblastn]
Nucleotide query - Translated database[tblastx]
Options:
For advanced blasting
Expect:
Number of:
Descriptions
1
2
3
4
5
10
20
50
100
Alignments
1
2
3
4
5
10
20
50
100
Matrix:
BLOSUM62
BLOSUM45
BLOSUM80
PAM30
PAM70
Other advanced:
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