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PLEXdb Blast
Map fasta sequences or probe sets to microarrays in PLEXdb using Blast. The search engine is provided by
NCBI BLAST
. For more information on blast, see the NCBI
Blast tutorials
. For more information about this tool, click
here
.
Query sequence:
probe set IDs
From
Arabidopsis ATH1 22k
Barley1 22k
Citrus
Cotton
Fusarium
Grape Vitis vinifera 16k
Maize 18k
Maize 58k NSF Array
Maize Cornchip0 8k
Medicago 61k
Poplar 61k
Rice 57k
Soybean 61k
Sugar Cane 8k
Tomato 10k
Wheat 61k
FASTA sequence
Microarray Platform:
Arabidopsis ATH1 22k
Barley1 22k
Citrus
Cotton
Fusarium
Grape Vitis vinifera 16k
Maize 18k
Maize 58k NSF Array
Maize Cornchip0 8k
Medicago 61k
Poplar 61k
Rice 57k
Soybean 61k
Sugar Cane 8k
Tomato 10k
Wheat 61k
BLAST Type:
Standard nucleotide-nucleotide BLAST [blastn]
Protein query - Translated database [tblastn]
Nucleotide query - Translated database[tblastx]
Options:
For advanced blasting
Expect:
Number of:
Descriptions
1
2
3
4
5
10
20
50
100
Alignments
1
2
3
4
5
10
20
50
100
Matrix:
BLOSUM62
BLOSUM45
BLOSUM80
PAM30
PAM70
Other advanced:
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