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PLEXdb Blast
Map fasta sequences or probe sets to microarrays in PLEXdb using Blast. The search engine is provided by
NCBI BLAST
. For more information on blast, see the NCBI
Blast tutorials
. For more information about this tool click
here
.
Query sequence:
gene list
Select a gene list
Guest: BLAST (2013-05-23 15:37:05) GS Plast.
Guest: BLAST (2013-05-24 01:49:16) miRNA_filtered
Guest: IMPORT (2013-05-21 01:41:56) roots
Guest: IMPORT (2013-05-21 01:54:31) roots up
Guest: IMPORT (2013-05-24 11:22:14) test3
Guest: IMPORT (2013-05-24 11:22:56) test4
Guest: PROFILE NEIGHBORS (2013-05-22 00:36:19) comt1
Guest: TREATMENT_EXPRESSION_GENES (2010-07-02 15:14:44) Ath_AT40_Pollen_Specific
Guest: TREATMENT_EXPRESSION_GENES (2010-07-02 15:28:11) Ath_AT40_Senescence_Specific
Guest: TREATMENT_EXPRESSION_GENES (2010-07-02 16:06:05) Grape_VV3_Skin_Specific
Guest: TREATMENT_EXPRESSION_GENES (2010-07-02 15:30:13) Maize_ZM14_Embryo_Specific
Guest: TREATMENT_EXPRESSION_GENES (2010-07-02 15:31:29) Maize_ZM14_Immature_ear_Specific
Guest: TREATMENT_EXPRESSION_GENES (2010-07-02 16:10:00) Medicago_ME1_Flower_Specific
Guest: TREATMENT_EXPRESSION_GENES (2010-07-02 16:13:18) Medicago_ME2_Root_meristem_Specific
Guest: TREATMENT_EXPRESSION_GENES (2010-07-02 16:17:08) Poplar_PT2_Absent_in_Catkin
Guest: TREATMENT_EXPRESSION_GENES (2010-07-02 16:15:36) Poplar_PT2_Catkin_Specific
Guest: TREATMENT_EXPRESSION_GENES (2010-07-02 16:23:30) Soy_GM20_Absent_in_shoot_Apical_Meristem
Guest: TREATMENT_EXPRESSION_GENES (2010-07-02 16:25:12) Soy_GM21_Mature_pollen_Specific
probe set IDs
From
Arabidopsis ATH1 22k
Barley1 22k
BradiAR1b520742
Citrus
Cotton
Fusarium
Grape Vitis vinifera 16k
GrapeGena520510F (Custom Affymetrix Grape Array)
Maize 18k
Maize 58k NSF Array
Maize Cornchip0 8k
Maize100WT_for_maize(Maize-100-format-Whole-Transcript Array for maize)
Maize100WT_for_Ust_may(Maize-100-format-Whole-Transcript Array for Ust. maydis
Medicago 61k
Nimblegen Grape Whole-Genome Microarray 29K 090407-Custom
Nimblegen Grape Whole-Genome Microarray 29K 090407-MD
Nimblegen Grape Whole-Genome Microarray 29K 090918-MD
Nimblegen Maize Whole-Genome Microarray 385K
Nimblegen Maize Whole-Genome Microarray 385K(VersionV2_5a.59)
Nine_Fungal_Array_for_Fusarium_graminearum_only (Fusarias520715)
Nine_Fungal_Array_for_Fusarium_oxysporum_only (Fusarias520715)
Nine_Fungal_Array_for_Fusarium_solani_only (Fusarias520715)
Nine_Fungal_Array_for_Fusarium_verticillioides_only (Fusarias520715)
Nine_Fungal_Array_for_Magnaporthe_grisea_only (Fusarias520715)
Nine_Fungal_Array_for_Puccinia_graminis_only (Fusarias520715)
Nine_Fungal_Array_for_Pyrenophora_tritici_repentis_only (Fusarias520715)
Nine_Fungal_Array_for_Ustilago maydis_only (Fusarias520715)
Nine_Fungal_Array_for_Verticillium_dahliae_only (Fusarias520715)
Poplar 61k
Rice 57k
Soybean 61k
Sugar Cane 8k
Tomato 10k
Wheat 61k
FASTA sequence
>Mtr.10012.1.S1_at gagcaactttattctaatgaagtttctgcacgtggaaacttattacttgccttaatgactcacggtgaagggtatcacaactttcatcatgaatttccgaaggatttccgaaatggataccgtttatttgattgggatccctcaaaatggattatatttactctacataaattaacaaaccaagttccaaaagtatctcgtgttcctgaaaatgaagttcgcaaagcaatggtaaatatggaaattattaaagcccaagaaaaatgtaaaaaatacgattggggaattgatccatcctcattgcccgtcatcacttacgagcagtataaacaaaaacaagaacaagaaggaaaagaatggatattagttgatgaatttgtgttggatgtttcgtcatttaaggatgatcatcctggtggtgcaaaaattttgaagaattattatggtaaagactccactaaagcattctatggtggtttgaatgatcattctaaagctgccaataccatgacggctatgtttagagttgccaaaatcgagaagaatcaaaaggaagaatagaacaatatttaccaattatattttttaaacataaaatcttgtaactttattttaaactaataatagtacaatagtgatatcatttaatcaataaaacaataaacaaatatttttatactat
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Microarray Platform:
Arabidopsis ATH1 22k
Barley1 22k
BradiAR1b520742
Citrus
Cotton
Fusarium
Grape Vitis vinifera 16k
GrapeGena520510F (Custom Affymetrix Grape Array)
Maize 18k
Maize 58k NSF Array
Maize Cornchip0 8k
Maize100WT_for_maize(Maize-100-format-Whole-Transcript Array for maize)
Maize100WT_for_Ust_may(Maize-100-format-Whole-Transcript Array for Ust. maydis
Medicago 61k
Nimblegen Grape Whole-Genome Microarray 29K 090407-Custom
Nimblegen Grape Whole-Genome Microarray 29K 090407-MD
Nimblegen Grape Whole-Genome Microarray 29K 090918-MD
Nimblegen Maize Whole-Genome Microarray 385K
Nimblegen Maize Whole-Genome Microarray 385K(VersionV2_5a.59)
Nine_Fungal_Array_for_Fusarium_graminearum_only (Fusarias520715)
Nine_Fungal_Array_for_Fusarium_oxysporum_only (Fusarias520715)
Nine_Fungal_Array_for_Fusarium_solani_only (Fusarias520715)
Nine_Fungal_Array_for_Fusarium_verticillioides_only (Fusarias520715)
Nine_Fungal_Array_for_Magnaporthe_grisea_only (Fusarias520715)
Nine_Fungal_Array_for_Puccinia_graminis_only (Fusarias520715)
Nine_Fungal_Array_for_Pyrenophora_tritici_repentis_only (Fusarias520715)
Nine_Fungal_Array_for_Ustilago maydis_only (Fusarias520715)
Nine_Fungal_Array_for_Verticillium_dahliae_only (Fusarias520715)
Poplar 61k
Rice 57k
Soybean 61k
Sugar Cane 8k
Tomato 10k
Wheat 61k
BLAST Type:
Standard nucleotide-nucleotide BLAST [blastn]
Protein query - Translated database [tblastn]
Nucleotide query - Translated database[tblastx]
Options:
For advanced blasting
Expect:
Number of:
Descriptions
1
2
3
4
5
10
20
50
100
Alignments
1
2
3
4
5
10
20
50
100
Matrix:
BLOSUM62
BLOSUM45
BLOSUM80
PAM30
PAM70
Other advanced:
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