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Nine fungal plant pathogen genome array

This array was designed by Corby Kistler and colleagues (USDA-ARS/University of Minnesota) in collaboration with Li-Jun Ma (Broad Institute), Jin-Rong Xu (Purdue University), Ulrich Gueldener (MIPS) and Affymetrix.

This 5 micron, 49 format, custom Affymetrix GeneChip combines an exon expression design along with genome tiling for several plant pathogenic fungi. Perfect match probe sets target all predicted genes from nine fungal genome assemblies (below) and complete genome tiling for the Fusarium graminearum and F. oxysporum f. sp. lycopersici genomes. The array is suitable for gene expression studies for the nine phytopathogenic fungi as well as ChIP-chip studies for the tiled genomes.

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