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MIAME/Plant-compliant and Plant Ontology enhanced expression resources for grape.

  • All Vitis (Grape) Arrays
  • Affymetrix GeneChip 16K Vitis vinifera (Grape) Genome Array:
    The Affymetrix 16K Vitis vinifera GeneChip was created in collaboration with the international grape community within the Affymetrix GeneChip consortia program.
    Affymetrix information page
    Array Annotation
    Experiments ( A List of All Public Affy 16K GeneChip Grape Experiments)
  • Vitis vinifera GrapeGen (Custom Affymetrix Grape) Array:
    Affymetrix Standard 3' design using 25-mers, 11 match/mismatch probepairs per transcript, 11 micron array. GeneChips were designed as described by the manufacturer in their GeneChip Custom Express Array Design Guide ( Poly-A control sequences of dap, lys, phe, and trp from Bacillus subtilis were also included. (Description quoted from GEO, GPL11004)
    Array Annotation
    Experiments ( A List of All Public GrapeGen Experiments)
  • Nimblegen Grape Whole-Genome Microarray 29K 090918-MD (nimbGrape):
    This array was designed at NimbleGen in collaboration with Dr. Massimo Delledonne using the V1 prediction from CRIBI that is based on the 12X assembly produced by the French-Italian consortium. NimbleGen information page
    Array Annotation
    Experiments ( A List of All Public NimbeGen Grape (29K 090918-MD) Experiments)
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Page last updated: September 23 2011 22:22:18