MIAME/Plant-compliant and Plant Ontology enhanced expression resources for rice.

The Affymetrix 57k Rice GeneChip was created in collaboration with the international rice community within the Affymetrix GeneChip consortia program.

The 20K rice long oligonucleotide array was developed by University of California at Davis (UCD), The Institute for Genomic Research (TIGR) and Iowa State University (ISU), and is funded by the National Science Foundation, Plant Genome Program, Project number DBI-0313887. More information can be found here.

• Rice Genome Array Information from Affymetrix.
• 57k Rice Array Annotation
• 20k & 45k NSF Rice Array Annotation
• Gene Expression Atlas
• Experiments
  Select an Experiment OS1:Rice 57K Affymetrix GeneChip Test OS2:Comparative Transcriptional Profiling of Two Contrasting Rice Genotypes under... OS3:Comparative transcriptional profiling of rice undergoing infection by Xanthom... OS4:Resistance gene-dependent responses in rice to the bacterial blight pathogen ... OS5:Expression data for reproductive development in rice OS6:Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing... OS7:Identification of rice genes differentially expressed upon virulent infection... OS8:Expression data from rice embryo,endosperm,root,leaf and seedling OS9:Comparative transcriptional profiling of two contrasting rice genotypes in re... OS10:Expression data for stress treatment in rice seedlings OS11:Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arse... OS12:Cytokinin responsive genes in rice OS13:Gene expression in OsRR6-overexpression line OS14:Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile OS15:Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice OS16:Genome-wide gene expression profiling of rice stigma OS17:Global gene expression profiles of Oryza sativa wild type Zhonghua11 and muta... OS18:Expression information of splicing factor OsSKIPa knock-down and overexpresse... OS19:Rice cultivars undergoing a susceptible and resistant interaction with the pa... OS20:Gene expression of rice root tips before, at and buckled by a hard layer in t... OS21:Molecular characterization and genetic analysis reveal SA0420 as an early sen... OS22:antiOsLIC collar chip OS23:Transcriptome analysis of gibberellin-signaling mutants in rice OS24:Mycroarray analyses reveal that plant mutagenesis may induce more transcripto... OS25:Expression data for heat shock in rice seedlings OS26:Detection of genomic deletions in rice by genomic DNA hybridization to oligon... OS27:Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic i... OS28:Rice seedling hormone treatment OS29:SNEP: Simultaneous detection of nucleotide and expression polymorphisms using... OS30:Root-specific transcriptional profiling of contrasting rice genotypes in resp... OS31:Transcriptome analysis of iron and phosphorus interaction in rice seedlings OS32:Dissecting the developmental transcriptomes of rice OS33:Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 ... OS34:Comparison of transcriptome profile between wild-type and dst mutant plants OS35:Temporal gene expression analyisis from rice root (cv. Nipponbare) infected w... OS36:Methanol is an endogenous elicitor molecule upon senescence of detached rice ... OS37:Genome-wide temporal-spatial gene expression profiling of drought responsiven... OS38:affy_xoo_rice-Transcriptomics-based identification of Xoo strain BAI3 Talc ta... OS39:Comparsion of gene expression profile in polaris (pola) mutant lines and its ... OS40:Transcriptional profiling of Cellulase induced hypersensitive reaction like r... OS41:Expression data from rice genotypes FL478 and IR29 OS42:Rice expression atlas (1): Anther development OS43:Rice expression atlas (2): Pollination - Fertilization OS44:Rice expression atlas (3): Early embryogenesis OS45:Rice expression atlas (4): Vegetative tissues OS46:Rice expression atlas: Plant reproductive process OS47:Gene expression in leaf blades of the rice Os-LBD37 overexpressor line RK1633... OS48:Temporal regulatory role of miR156 during leaf ontogenesis OS49:Whole genome transcriptome profiling of Pusa 1266 and Pusa Basmati 1 in panic... OS50:Transcription profiling of parental lines and bulked salt sensitive and salt ... OS51:bulked RILs with high and low grain number per panicle derived from 2 cultiva... OS52:Microarray data from aerial tissue of submergence tolerant M202(Sub1) and int... OS53:Transgenic rice line carrying the maize resistance gene Rxo1 to Xanthomonas o... OS54:Genome-wide gene expression of rice cultivar Gui-630 (Indica) X Taiwanjing (J... OS55:Rice leaf transcriptome from 6 week old plants OS56:Expression data from field droughted rice plants OS57:Identification of Rhizome-Specific Genes by Genome-wide Differential Expressi... OS58:Expression data from rice seedlings of wild type and the CHR729 mutant OS60:A global analysis of QTLs for expression variations in rice shoot at early se... OS61:Expression analysis of genes in the lamina joint of lc1 mutant compared with ... OS62:Analysis of anther transcriptomes to identify genes contributing to meiosis a... OS63:genome-wide gene expression profiling of rice pollen in defferent developmetn... OS64:Transcriptome Phase Distribution Analysis Reveals Diurnal Regulated Biologica... OS65:Whole-Genome Analysis of SSB Larvae Infestation Regulated Rice Genes OS66:Comparison of transcriptional responses of two susceptible rice cultivars to ... OS67:Expression data from transgenic rice with OsEATB OS68:Transcript profiling of crown rootless1 mutant stem base reveals new elements... OS69:Oryza sativa genes expressed in the early compatible interaction with root-kn... OS70:affy_meloidogyne_rice2-Oryza sativa genes expressed in the early compatible i... OS71:Expression data from shoot bases of rice seedling after gravistimulation OS72:Expression data from PSARK::IPT and wildtype rice plants OS73:Expression comparasion of rice seedlings of Osabl1 mutant and WT under ABA tr... OS74:DNA microarray data from transgenic rice KMD and its parent XS11 OS75:DNA microarray data from transgenic rice Huahui 1 (HH1) and its parent Minghu... OS76:Differential expression for rice-gall midge interaction OS77:Expression data from rice varieties IRAT109 and ZS97 for drought stress treat... OS78:Expression data from transgenic rice with anti-OsPDCD5 OS79:A single functional blast resistance gene Pi54 activates complex defense mech... OS80:Express data from rice endosperm OS81:Global gene expression profiles of Oryza sativa wild type Nipponbare and muta... OS82:Expression data from rice after brown planthopper attack OS83:Expression profile of high yielding rice introgression line OS84:Differential expression for salt and drought stress OS85:Expression data from infected (Xanthomonas oryzae pv. Oryzae (P10)) leaf in j... OS86:Expression data from LRK1 060615 transgenic rice and control 9311 OS87:Gene expression profiling of rice embryogenic calli after Agrobacterium infec... OS88:Gene expression profiling of rice embryogenic calli after Agrobacterium infec... OS89:Expression data from rice embryo and endosperm development OS90:Expression data from rice seeds during low temperature treatment OS91:Rice gene global expression analysis upon inoculation with different Magnapor... OS92:Rice gene global expression during nonhost interaction with Blumeria graminis... OS93:Gene Expression Profiling during Male Gametophyte Development in Rice OS94:Gene expression in mature pollen and sperm cells versus young seedling as a v... OS95:Genome-wide gene expression profiling of rice Zhonghua11 and ila1 lamina joint OS96:Expression data of one-week-old rice seedlings exposed to Pi-deficient soluti... OS97:Comparison of transcriptome profile between wild-type and Epi-df mutant plants OS98:Nitrogen-efficient rice over-expressing alanine aminotransferase OS99:Comparative Transcriptomes Profiling of Photoperiod-sensitive Male Sterile Ri... OS100:Expression data from OsRP1L1-overexpressing plant leaf in japonica rice (cv. ... OS101:Comparison of transcriptome profile between wild-type and dao mutant plants OS102:Expression data from IR64 rice transformed with 35S::OsPSTOL1 gene
• A List of All Publicly Visible Rice Experiments